4JHJ | pdb_00004jhj

Crystal structure of Danio rerio Slip1 in complex with Dbp5

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	PH	e4jhjB1	A: a/b three-layered sandwiches	X: PBZ domain	H: PBZ domain	T: PBZ domain	F: PH	ECOD (v294.1)
A	PH	e4jhjA1	A: a/b three-layered sandwiches	X: PBZ domain	H: PBZ domain	T: PBZ domain	F: PH	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.25.40.180	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)
A	1.25.40.180	Mainly Alpha	Alpha Horseshoe	Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	DEAD/H (Asp-Glu-Ala-Asp/His) box polypeptide 19 (DBP5 homolog, yeast)	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding hydrolase activity catalytic activity nucleic acid conformation isomerase activity isomerase activity catalytic activity, acting on RNA catalytic activity, acting on a nucleic acid helicase activity RNA helicase activity ATP-dependent activity, acting on RNA macromolecular conformation isomerase activity ATP-dependent activity RNA binding nucleic acid binding	-	cellular anatomical structure intracellular anatomical structure cytoplasm membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle
A, B	MIF4G domain-containing protein B	translation regulator activity translation activator activity RNA binding binding nucleic acid binding identical protein binding protein binding	regulation of cellular process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression translational initiation protein metabolic process regulation of biosynthetic process regulation of biological process regulation of translational initiation regulation of protein metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression regulation of cellular process protein biosynthetic process regulation of primary metabolic process post-transcriptional regulation of gene expression translational initiation protein metabolic process regulation of biosynthetic process regulation of biological process regulation of translational initiation regulation of protein metabolic process biological regulation primary metabolic process regulation of macromolecule metabolic process gene expression translation macromolecule biosynthetic process regulation of gene expression biosynthetic process regulation of translation regulation of macromolecule biosynthetic process metabolic process cellular process macromolecule metabolic process regulation of metabolic process cap-dependent translational initiation cytoplasmic translation cytoplasmic translational initiation	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol protein-containing complex histone mRNA stem-loop binding complex membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D	IPR001650	Helicase, C-terminal domain-like	Domain
C, D	IPR014001	Helicase superfamily 1/2, ATP-binding domain	Domain
C, D	IPR014014	RNA helicase, DEAD-box type, Q motif	Domain
C, D	IPR011545	DEAD/DEAH-box helicase domain	Domain
C, D	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B	IPR003890	MIF4G-like, type 3	Domain
A, B	IPR051367	mRNA Translation Regulation/Replication-dependent Histone mRNA Translation	Family
A, B	IPR016024	Armadillo-type fold	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.