4JGS | pdb_00004jgs

Crystal structure of the xmrv tm retroviral fusion core

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2 Family	Virus ectodomain	8071637	4003841	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	Virus ectodomain	8071638	3001628	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
I	SLT_beta	e4jgsI1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (v294.1)
H	SLT_beta	e4jgsH1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (v294.1)
G	TLV_coat	e4jgsG1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: RNA-binding domain, RBD	T: RNA-binding domain, RBD	F: TLV_coat	ECOD (v294.1)
F	SLT_beta	e4jgsF1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (v294.1)
E	SLT_beta	e4jgsE1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (v294.1)
D	SLT_beta	e4jgsD1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (v294.1)
C	SLT_beta	e4jgsC1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (v294.1)
B	SLT_beta	e4jgsB1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (v294.1)
A	SLT_beta	e4jgsA1	A: a/b three-layered sandwiches	X: Suppressor of Fused, C-terminal domain	H: Bacterial enterotoxins	T: Bacterial enterotoxins	F: SLT_beta	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
I	1.10.287.210	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
H	1.10.287.210	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
G	1.10.287.210	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
F	1.10.287.210	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
E	1.10.287.210	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
D	1.10.287.210	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
C	1.10.287.210	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
B	1.10.287.210	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)
A	1.10.287.210	Mainly Alpha	Orthogonal Bundle	Helix Hairpins		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I	MLV-related proviral Env polyprotein	cation binding ion binding binding metal ion binding small molecule binding	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR008981	F-MuLV receptor-binding	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I	IPR018154	TLV/ENV coat polyprotein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.