4J0Q
Crystal structure of Pseudomonas putida elongation factor Tu (EF-Tu)
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
---|---|---|---|---|---|
E | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056526 | 3002024 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | Ras-like P-loop GTPases | 8056525 | 3002022 | SCOP2B (2022-06-29) |
E | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056528 | 3002024 | SCOP2B (2022-06-29) |
A | SCOP2 Family | Translation factor common region-like | 8056524 | 4004050 | SCOP2 (2022-06-29) |
A | SCOP2 Family | EF-Tu C-terminal domain-like | 8056527 | 4002110 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | Ras-like P-loop GTPases | 8056525 | 3002022 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | EF-Tu post-G domain-like | 8056526 | 3002024 | SCOP2 (2022-06-29) |
A | SCOP2 Superfamily | EF-Tu post-G domain-like | 8056528 | 3002024 | SCOP2 (2022-06-29) |
B | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056526 | 3002024 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056528 | 3002024 | SCOP2B (2022-06-29) |
B | SCOP2B Superfamily | Ras-like P-loop GTPases | 8056525 | 3002022 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056526 | 3002024 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056528 | 3002024 | SCOP2B (2022-06-29) |
C | SCOP2B Superfamily | Ras-like P-loop GTPases | 8056525 | 3002022 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056526 | 3002024 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | EF-Tu post-G domain-like | 8056528 | 3002024 | SCOP2B (2022-06-29) |
D | SCOP2B Superfamily | Ras-like P-loop GTPases | 8056525 | 3002022 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
---|---|---|---|---|---|---|---|---|
E | PF03144 | e4j0qE2 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF03144 | ECOD (1.6) |
E | PF03143 | e4j0qE3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Aminomethyltransferase beta-barrel domain | F: PF03143 | ECOD (1.6) |
E | PF00009 | e4j0qE4 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00009 | ECOD (1.6) |
A | PF03144 | e4j0qA3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF03144 | ECOD (1.6) |
A | PF03143 | e4j0qA1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Aminomethyltransferase beta-barrel domain | F: PF03143 | ECOD (1.6) |
A | PF00009 | e4j0qA2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00009 | ECOD (1.6) |
B | PF03144 | e4j0qB6 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF03144 | ECOD (1.6) |
B | PF03143 | e4j0qB4 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Aminomethyltransferase beta-barrel domain | F: PF03143 | ECOD (1.6) |
B | PF00009 | e4j0qB5 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00009 | ECOD (1.6) |
C | PF03144 | e4j0qC3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF03144 | ECOD (1.6) |
C | PF03143 | e4j0qC1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Aminomethyltransferase beta-barrel domain | F: PF03143 | ECOD (1.6) |
C | PF00009 | e4j0qC2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00009 | ECOD (1.6) |
D | PF03144 | e4j0qD3 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Alanine racemase-C | F: PF03144 | ECOD (1.6) |
D | PF03143 | e4j0qD1 | A: beta barrels | X: cradle loop barrel | H: RIFT-related | T: Aminomethyltransferase beta-barrel domain | F: PF03143 | ECOD (1.6) |
D | PF00009 | e4j0qD2 | A: a/b three-layered sandwiches | X: P-loop domains-like | H: P-loop domains-related | T: P-loop containing nucleoside triphosphate hydrolases | F: PF00009 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
Protein Family Annotation Pfam Database Homepage
Chains | Accession | Name | Description | Comments | Source |
---|---|---|---|---|---|
PF00009 | Elongation factor Tu GTP binding domain (GTP_EFTU) | Elongation factor Tu GTP binding domain | This domain contains a P-loop motif, also found in several other families such as Pfam:PF00071, Pfam:PF00025 and Pfam:PF00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains. | Domain | |
PF03143 | Elongation factor Tu C-terminal domain (GTP_EFTU_D3) | Elongation factor Tu C-terminal domain | Elongation factor Tu consists of three structural domains, this is the third domain. This domain adopts a beta barrel structure. This the third domain is involved in binding to both charged tRNA [1] and binding to EF-Ts Pfam:PF00889 [2]. | Domain | |
PF03144 | Elongation factor Tu domain 2 (GTP_EFTU_D2) | Elongation factor Tu domain 2 | Elongation factor Tu consists of three structural domains, this is the second domain. This domain adopts a beta barrel structure. This the second domain is involved in binding to charged tRNA [1]. This domain is also found in other proteins such as e ... | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
Chains | Accession | Name | Type |
---|---|---|---|
IPR000795 | Translational (tr)-type GTP-binding domain | Domain | |
IPR033720 | Elongation factor Tu, domain 2 | Domain | |
IPR009001 | Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal | Homologous Superfamily | |
IPR031157 | Tr-type G domain, conserved site | Conserved Site | |
IPR004541 | Translation elongation factor EFTu/EF1A, bacterial/organelle | Family | |
IPR004161 | Translation elongation factor EFTu-like, domain 2 | Domain | |
IPR009000 | Translation protein, beta-barrel domain superfamily | Homologous Superfamily | |
IPR004160 | Translation elongation factor EFTu/EF1A, C-terminal | Domain | |
IPR005225 | Small GTP-binding protein domain | Domain | |
IPR041709 | Elongation factor Tu (EF-Tu), GTP-binding domain | Domain | |
IPR027417 | P-loop containing nucleoside triphosphate hydrolase | Homologous Superfamily |