Annotations: 4IYM

Crystal structure of putative methylmalonate-semialdehyde dehydrogenase from Sinorhizobium meliloti 1021 complexed with NAD, target 011934

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
P	d4iymp_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	Ensifer meliloti (Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
O	d4iymo1	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	Ensifer meliloti (Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
O	d4iymo2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Ensifer meliloti (Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
N	d4iymn_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	Ensifer meliloti (Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
M	d4iymm_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	Ensifer meliloti (Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
L	d4iyml_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	Ensifer meliloti (Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
K	d4iymk_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	Ensifer meliloti (Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
J	d4iymj_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	Ensifer meliloti (Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
I	d4iymi_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	Ensifer meliloti (Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
H	d4iymh_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	Ensifer meliloti (Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
G	d4iymg_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	Ensifer meliloti (Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
F	d4iymf_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	Ensifer meliloti (Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
E	d4iyme1	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	Ensifer meliloti (Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
E	d4iyme2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Ensifer meliloti (Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
D	d4iymd_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	Ensifer meliloti (Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
C	d4iymc1	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	Ensifer meliloti (Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
C	d4iymc2	Artifacts	Tags	Tags	Tags	N-terminal Tags	Ensifer meliloti (Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
B	d4iymb_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	Ensifer meliloti (Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)
A	d4iyma_	Alpha and beta proteins (a/b)	ALDH-like	ALDH-like	automated matches	automated matches	Ensifer meliloti (Sinorhizobium meliloti 1021 ) [TaxId: 266834 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P	SCOP2B Superfamily	ALDH-like	8072443	3001479	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	ALDH-like	8072443	3001479	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	ALDH-like	8072443	3001479	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	ALDH-like	8072443	3001479	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	ALDH-like	8072443	3001479	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	ALDH-like	8072443	3001479	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	ALDH-like	8072443	3001479	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	ALDH-like	8072443	3001479	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	ALDH-like	8072443	3001479	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	ALDH-like	8072443	3001479	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	ALDH-like	8072443	3001479	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	ALDH-like	8072443	3001479	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	ALDH-like	8072443	3001479	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ALDH-like	8072443	3001479	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ALDH-like	8072443	3001479	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	ALDH-like	8072443	3001479	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	Aldedh	e4iymP1	A: alpha arrays	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (v295.2)
O	Aldedh	e4iymO1	A: alpha arrays	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (v295.2)
N	Aldedh	e4iymN1	A: alpha arrays	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (v295.2)
M	Aldedh	e4iymM1	A: alpha arrays	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (v295.2)
L	Aldedh	e4iymL1	A: alpha arrays	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (v295.2)
K	Aldedh	e4iymK1	A: alpha arrays	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (v295.2)
J	Aldedh	e4iymJ1	A: alpha arrays	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (v295.2)
I	Aldedh	e4iymI1	A: alpha arrays	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (v295.2)
H	Aldedh	e4iymH1	A: alpha arrays	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (v295.2)
G	Aldedh	e4iymG1	A: alpha arrays	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (v295.2)
F	Aldedh	e4iymF1	A: alpha arrays	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (v295.2)
E	Aldedh	e4iymE1	A: alpha arrays	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (v295.2)
D	Aldedh	e4iymD1	A: alpha arrays	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (v295.2)
C	Aldedh	e4iymC1	A: alpha arrays	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (v295.2)
B	Aldedh	e4iymB1	A: alpha arrays	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (v295.2)
A	Aldedh	e4iymA1	A: alpha arrays	X: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	H: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	T: Sulfite reductase hemoprotein (SiRHP), domains 2 and 4	F: Aldedh	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
P	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
P	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
O	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
O	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
N	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
N	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
M	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
M	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
L	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
L	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
K	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
K	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
J	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
J	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
I	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
I	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
H	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
H	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
G	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
G	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
F	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
F	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
E	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
E	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
D	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
D	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
C	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
C	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
B	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
B	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)
A	3.40.605.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 1	CATH (4.3.0)
A	3.40.309.10	Alpha Beta	3-Layer(aba) Sandwich	Aldehyde Dehydrogenase	Chain A, domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	PF00171	Aldehyde dehydrogenase family (Aldedh)	Aldehyde dehydrogenase family	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	Methylmalonate-semialdehyde dehydrogenase	oxidoreductase activity methylmalonate-semialdehyde dehydrogenase (acylating, NAD+) activity oxidoreductase activity, acting on the aldehyde or oxo group of donors catalytic activity oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	pyrimidine-containing compound metabolic process catabolic process thymine catabolic process pyrimidine-containing compound catabolic process primary metabolic process pyrimidine nucleobase catabolic process nucleobase-containing compound metabolic process pyrimidine nucleobase metabolic process thymine metabolic process nucleobase-containing small molecule metabolic process nucleobase catabolic process nucleobase metabolic process small molecule metabolic process metabolic process pyrimidine-containing compound metabolic process catabolic process thymine catabolic process pyrimidine-containing compound catabolic process primary metabolic process pyrimidine nucleobase catabolic process nucleobase-containing compound metabolic process pyrimidine nucleobase metabolic process thymine metabolic process nucleobase-containing small molecule metabolic process nucleobase catabolic process nucleobase metabolic process small molecule metabolic process metabolic process cellular process oxoacid metabolic process carboxylic acid metabolic process amino acid metabolic process branched-chain amino acid catabolic process proteinogenic amino acid metabolic process proteinogenic amino acid catabolic process carboxylic acid catabolic process branched-chain amino acid metabolic process L-valine catabolic process small molecule catabolic process amino acid catabolic process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR010061	Methylmalonate-semialdehyde dehydrogenase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR015590	Aldehyde dehydrogenase domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR016161	Aldehyde/histidinol dehydrogenase	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR016162	Aldehyde dehydrogenase, N-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR016163	Aldehyde dehydrogenase, C-terminal	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR016160	Aldehyde dehydrogenase, cysteine active site	Conserved Site