Crystal Structure of the AvGluR1 ligand binding domain complex with alanine at 1.72 Angstrom resolution
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
| Chains | Domain Info | Class | Fold | Superfamily | Family | Domain | Species | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | d4io5b1 | Alpha and beta proteins (a/b) | Periplasmic binding protein-like II | Periplasmic binding protein-like II | automated matches | automated matches | Rotifer (Adineta vaga ) [TaxId: 104782 ], Rotifer (Adineta vaga ) [TaxId: 104782 ], | SCOPe (2.08) |
| B | d4io5b2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Rotifer (Adineta vaga ) [TaxId: 104782 ], Rotifer (Adineta vaga ) [TaxId: 104782 ], | SCOPe (2.08) |
| A | d4io5a1 | Alpha and beta proteins (a/b) | Periplasmic binding protein-like II | Periplasmic binding protein-like II | automated matches | automated matches | Rotifer (Adineta vaga ) [TaxId: 104782 ], Rotifer (Adineta vaga ) [TaxId: 104782 ], | SCOPe (2.08) |
| A | d4io5a2 | Artifacts | Tags | Tags | Tags | N-terminal Tags | Rotifer (Adineta vaga ) [TaxId: 104782 ], Rotifer (Adineta vaga ) [TaxId: 104782 ], | SCOPe (2.08) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | SBP_bac_3_1st | e4io5B1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_3_1st | ECOD (1.6) |
| B | SBP_bac_3_2nd | e4io5B2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_3_2nd | ECOD (1.6) |
| A | SBP_bac_3_1st | e4io5A2 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_3_1st | ECOD (1.6) |
| A | SBP_bac_3_2nd | e4io5A1 | A: a/b three-layered sandwiches | X: Periplasmic binding protein-like II (From Topology) | H: Periplasmic binding protein-like II (From Topology) | T: Periplasmic binding protein-like II | F: SBP_bac_3_2nd | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (4.3.0) |
| A | 3.40.190.10 | Alpha Beta | 3-Layer(aba) Sandwich | D-Maltodextrin-Binding Protein | domain 2 | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR015683 | Ionotropic glutamate receptor | Family | |
| IPR028082 | Periplasmic binding protein-like I | Homologous Superfamily | |
| IPR000337 | GPCR, family 3 | Family | |
| IPR001320 | Ionotropic glutamate receptor, C-terminal | Domain | |
| IPR001828 | Receptor, ligand binding region | Domain | |
| IPR019594 | Ionotropic glutamate receptor, L-glutamate and glycine-binding domain | Domain |
Membrane Protein Annotation: mpstruc mpstruc Database Homepage
| Chains | Resource Link | Group | Subgroup | Protein |
|---|---|---|---|---|
| mpstruc | TRANSMEMBRANE PROTEINS: ALPHA-HELICAL | Channels: Other Ion Channels | GluR1 Glutamate receptor ligand binding domain with bound Glu |
