Crystal Structure of BenM_DBD/benA site 1 DNA Complex
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| A | PH | e4ihtA1 | A: alpha bundles | X: PBZ domain | H: PBZ domain | T: PBZ domain | F: PH | ECOD (develop294) |
| B | PH | e4ihtB1 | A: alpha bundles | X: PBZ domain | H: PBZ domain | T: PBZ domain | F: PH | ECOD (develop294) |
| D | PH | e4ihtD1 | A: alpha bundles | X: PBZ domain | H: PBZ domain | T: PBZ domain | F: PH | ECOD (develop294) |
| C | PH | e4ihtC1 | A: alpha bundles | X: PBZ domain | H: PBZ domain | T: PBZ domain | F: PH | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| A | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
| B | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
| D | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
| C | 1.10.10.10 | Mainly Alpha | Orthogonal Bundle | Arc Repressor Mutant, subunit A | Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | CATH (4.3.0) |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
| Chains | Polymer | Molecular Function | Biological Process | Cellular Component |
|---|---|---|---|---|
| benA site 1 DNA | - | - | - | |
| benA site 1 DNA - complement | - | - | - | |
| HTH-type transcriptional regulator BenM | - |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR005119 | LysR, substrate-binding | Domain | |
| IPR000847 | LysR, HTH, N-terminal domain | Domain | |
| IPR036388 | Winged helix-like DNA-binding domain superfamily | Homologous Superfamily | |
| IPR036390 | Winged helix DNA-binding domain superfamily | Homologous Superfamily |














