4IHF | pdb_00004ihf

Chasing Acyl Carrier Protein Through a Catalytic Cycle of Lipid A Production

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d4ihfl_	All alpha proteins	Acyl carrier protein-like	ACP-like	Acyl-carrier protein (ACP)	automated matches	(Escherichia coli str. 'clone D i14 ) [TaxId: 885275 ],	SCOPe (2.08)
K	d4ihfk_	All alpha proteins	Acyl carrier protein-like	ACP-like	Acyl-carrier protein (ACP)	automated matches	(Escherichia coli str. 'clone D i14 ) [TaxId: 885275 ],	SCOPe (2.08)
J	d4ihfj_	All alpha proteins	Acyl carrier protein-like	ACP-like	Acyl-carrier protein (ACP)	automated matches	(Escherichia coli str. 'clone D i14 ) [TaxId: 885275 ],	SCOPe (2.08)
I	d4ihfi_	All alpha proteins	Acyl carrier protein-like	ACP-like	Acyl-carrier protein (ACP)	automated matches	(Escherichia coli str. 'clone D i14 ) [TaxId: 885275 ],	SCOPe (2.08)
H	d4ihfh_	All alpha proteins	Acyl carrier protein-like	ACP-like	Acyl-carrier protein (ACP)	automated matches	(Escherichia coli str. 'clone D i14 ) [TaxId: 885275 ],	SCOPe (2.08)
G	d4ihfg_	All alpha proteins	Acyl carrier protein-like	ACP-like	Acyl-carrier protein (ACP)	automated matches	(Escherichia coli str. 'clone D i14 ) [TaxId: 885275 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
F	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8091508	3001804	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	MurE/MurF N-terminal domain	8091500	3000146	SCOP2B (2022-06-29)
E	SCOP2 Family	UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase LpxD, N-terminal domain-like	8046204	4004951	SCOP2 (2022-06-29)
E	SCOP2 Family	UDP N-acetylglucosamine acyltransferase-like	8091507	4002830	SCOP2 (2022-06-29)
E	SCOP2 Superfamily	MurE/MurF N-terminal domain	8091500	3000146	SCOP2 (2022-06-29)
E	SCOP2 Superfamily	Trimeric LpxA-like enzymes	8091508	3001804	SCOP2 (2022-06-29)
D	SCOP2B Superfamily	MurE/MurF N-terminal domain	8091500	3000146	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8091508	3001804	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8091508	3001804	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	MurE/MurF N-terminal domain	8091500	3000146	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8091508	3001804	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	MurE/MurF N-terminal domain	8091500	3000146	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Trimeric LpxA-like enzymes	8091508	3001804	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	MurE/MurF N-terminal domain	8091500	3000146	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	Sigma70_r2,Sigma70_ner	e4ihfL1	A: alpha bundles	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Sigma70_r2,Sigma70_ner	ECOD (develop294)
K	Sigma70_r2,Sigma70_ner	e4ihfK1	A: alpha bundles	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Sigma70_r2,Sigma70_ner	ECOD (develop294)
J	Sigma70_r2,Sigma70_ner	e4ihfJ1	A: alpha bundles	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Sigma70_r2,Sigma70_ner	ECOD (develop294)
I	Sigma70_r2,Sigma70_ner	e4ihfI1	A: alpha bundles	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Sigma70_r2,Sigma70_ner	ECOD (develop294)
H	Sigma70_r2,Sigma70_ner	e4ihfH1	A: alpha bundles	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Sigma70_r2,Sigma70_ner	ECOD (develop294)
G	Sigma70_r2,Sigma70_ner	e4ihfG1	A: alpha bundles	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Sigma70_r2,Sigma70_ner	ECOD (develop294)
F	Sigma70_r2,Sigma70_ner	e4ihfF1	A: alpha bundles	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Sigma70_r2,Sigma70_ner	ECOD (develop294)
E	Sigma70_r2,Sigma70_ner	e4ihfE1	A: alpha bundles	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Sigma70_r2,Sigma70_ner	ECOD (develop294)
D	Sigma70_r2,Sigma70_ner	e4ihfD1	A: alpha bundles	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Sigma70_r2,Sigma70_ner	ECOD (develop294)
C	Sigma70_r2,Sigma70_ner	e4ihfC1	A: alpha bundles	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Sigma70_r2,Sigma70_ner	ECOD (develop294)
B	Sigma70_r2,Sigma70_ner	e4ihfB1	A: alpha bundles	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Sigma70_r2,Sigma70_ner	ECOD (develop294)
A	Sigma70_r2,Sigma70_ner	e4ihfA1	A: alpha bundles	X: TIM beta/alpha-barrel	H: TIM barrels	T: TIM barrels	F: Sigma70_r2,Sigma70_ner	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.40.1390.10	Alpha Beta	3-Layer(aba) Sandwich	Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase	Chain: A, domain 1	CATH (4.3.0)
F	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
E	3.40.1390.10	Alpha Beta	3-Layer(aba) Sandwich	Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase	Chain: A, domain 1	CATH (4.3.0)
E	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
D	3.40.1390.10	Alpha Beta	3-Layer(aba) Sandwich	Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase	Chain: A, domain 1	CATH (4.3.0)
D	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
C	3.40.1390.10	Alpha Beta	3-Layer(aba) Sandwich	Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase	Chain: A, domain 1	CATH (4.3.0)
C	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
B	3.40.1390.10	Alpha Beta	3-Layer(aba) Sandwich	Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase	Chain: A, domain 1	CATH (4.3.0)
B	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)
A	3.40.1390.10	Alpha Beta	3-Layer(aba) Sandwich	Udp-n-acetylmuramoylalanyl-d-glutamate--2,6- Diaminopimelate Ligase	Chain: A, domain 1	CATH (4.3.0)
A	2.160.10.10	Mainly Beta	3 Solenoid	UDP N-Acetylglucosamine Acyltransferase	domain 1	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF00132	Bacterial transferase hexapeptide (six repeats) (Hexapep)	Bacterial transferase hexapeptide (six repeats)	-	Repeat
A, B, C, D, E A, B, C, D, E, F	PF04613	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD (LpxD)	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-) catalyses an early step in lipid A biosynthesis: UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] -> UDP-2,3-bis(3-hydroxytetradec ...	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase (EC 2.3.1.-) catalyses an early step in lipid A biosynthesis: UDP-3-O-(3-hydroxytetradecanoyl)glucosamine + (R)-3-hydroxytetradecanoyl- [acyl carrier protein] -> UDP-2,3-bis(3-hydroxytetradecanoyl)glucosamine + [acyl carrier protein] [1]. Members of this family also contain a hexapeptide repeat (Pfam:PF00132). This family constitutes the non-repeating region of LPXD proteins.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
G, H, I, J, K G, H, I, J, K, L	Acyl carrier protein	-	-	-
A, B, C, D, E A, B, C, D, E, F	UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase	acyltransferase activity acyltransferase activity, transferring groups other than amino-acyl groups transferase activity catalytic activity N-acyltransferase activity UDP-3-O-[(3R)-3-hydroxyacyl]-glucosamine N-acyltransferase activity identical protein binding protein binding binding	carbohydrate derivative biosynthetic process lipooligosaccharide metabolic process glycolipid metabolic process lipid A biosynthetic process liposaccharide metabolic process carbohydrate derivative metabolic process lipid biosynthetic process primary metabolic process glycolipid biosynthetic process phospholipid biosynthetic process phospholipid metabolic process lipid A metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process carbohydrate derivative biosynthetic process lipooligosaccharide metabolic process glycolipid metabolic process lipid A biosynthetic process liposaccharide metabolic process carbohydrate derivative metabolic process lipid biosynthetic process primary metabolic process glycolipid biosynthetic process phospholipid biosynthetic process phospholipid metabolic process lipid A metabolic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process phosphate-containing compound metabolic process lipooligosaccharide biosynthetic process metabolic process cellular process phosphorus metabolic process lipid metabolic process response to stimulus response to chemical response to antibiotic	cellular anatomical structure membrane intracellular anatomical structure cytoplasm cytosol

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR001451	Hexapeptide repeat	Repeat
A, B, C, D, E A, B, C, D, E, F	IPR011004	Trimeric LpxA-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F	IPR007691	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase LpxD	Family
A, B, C, D, E A, B, C, D, E, F	IPR018357	Hexapeptide transferase, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F	IPR020573	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, non-repeat region	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.