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 4HWV | pdb_00004hwv

Structure of Pectate Lyase from Acidovorax avenae subsp citrulli

External Resource: Annotation


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
BSCOP2 FamilyPectate lyase-like 8076368 4002788 SCOP2 (2022-06-29)
BSCOP2 SuperfamilyPectin lyase-like 8076369 3001746 SCOP2 (2022-06-29)
ASCOP2B SuperfamilyPectin lyase-like 8076369 3001746 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BSigma70_r2,Sigma70_nere4hwvB1 A: alpha arraysX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF: Sigma70_r2,Sigma70_nerECOD (v295.2)
ASigma70_r2,Sigma70_nere4hwvA1 A: alpha arraysX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF: Sigma70_r2,Sigma70_nerECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-likeCATH (4.3.0)
A2.160.20.10 Mainly Beta 3 Solenoid Pectate Lyase C-like Single-stranded right-handed beta-helix, Pectin lyase-likeCATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Pectate lyase/Amb allergen -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR012334Pectin lyase foldHomologous Superfamily
A, B
IPR045032Pectin lyase familyFamily
A, B
IPR002022Pectate lyaseDomain
A, B
IPR011050Pectin lyase fold/virulence factorHomologous Superfamily