Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
APF05638e4hkhA1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: PF05638ECOD (1.6)
BPF05638e4hkhB1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: PF05638ECOD (1.6)
C [auth D]PF05638e4hkhD1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: PF05638ECOD (1.6)
D [auth E]PF05638e4hkhE1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: PF05638ECOD (1.6)
E [auth F]PF05638e4hkhF1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: PF05638ECOD (1.6)
F [auth G]PF05638e4hkhG1 A: beta barrelsX: cradle loop barrelH: RIFT-relatedT: FMN-binding split barrelF: PF05638ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
A2.30.110.20 Mainly Beta Roll Pnp Oxidase Chain ACATH (4.3.0)
B2.30.110.20 Mainly Beta Roll Pnp Oxidase Chain ACATH (4.3.0)
C [auth D]2.30.110.20 Mainly Beta Roll Pnp Oxidase Chain ACATH (4.3.0)
D [auth E]2.30.110.20 Mainly Beta Roll Pnp Oxidase Chain ACATH (4.3.0)
E [auth F]2.30.110.20 Mainly Beta Roll Pnp Oxidase Chain ACATH (4.3.0)
F [auth G]2.30.110.20 Mainly Beta Roll Pnp Oxidase Chain ACATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF05638Type VI secretion system effector, Hcp (T6SS_HCP)Type VI secretion system effector, HcpHCP is a family of proteins which are expressed in up to 1000 copies in Gram-negative bacteria. Together these copies aggregate into a needle-like shaft or tube that will penetrate other bacteria via a puncturing protein attached to its head [1]. In ...HCP is a family of proteins which are expressed in up to 1000 copies in Gram-negative bacteria. Together these copies aggregate into a needle-like shaft or tube that will penetrate other bacteria via a puncturing protein attached to its head [1]. Initially Hcp forms a hexameric structure with a central channel of 40 Angstroms. These hexamers pile up one on top of each other forming nanotubes resembling the gp19 tail phage tube [2].
Domain