4H6C | pdb_00004h6c

Crystal Structure of the Allene Oxide Cyclase 1 from Physcomitrella patens

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
L	d4h6cl_	All beta proteins	AOC barrel-like	Allene oxide cyclase-like	Allene oxide cyclase-like	automated matches	(Physcomitrium patens ) [TaxId: 3218 ],	SCOPe (2.08)
K	d4h6ck_	All beta proteins	AOC barrel-like	Allene oxide cyclase-like	Allene oxide cyclase-like	automated matches	(Physcomitrium patens ) [TaxId: 3218 ],	SCOPe (2.08)
J	d4h6cj_	All beta proteins	AOC barrel-like	Allene oxide cyclase-like	Allene oxide cyclase-like	automated matches	(Physcomitrium patens ) [TaxId: 3218 ],	SCOPe (2.08)
I	d4h6ci_	All beta proteins	AOC barrel-like	Allene oxide cyclase-like	Allene oxide cyclase-like	automated matches	(Physcomitrium patens ) [TaxId: 3218 ],	SCOPe (2.08)
H	d4h6ch_	All beta proteins	AOC barrel-like	Allene oxide cyclase-like	Allene oxide cyclase-like	automated matches	(Physcomitrium patens ) [TaxId: 3218 ],	SCOPe (2.08)
G	d4h6cg_	All beta proteins	AOC barrel-like	Allene oxide cyclase-like	Allene oxide cyclase-like	automated matches	(Physcomitrium patens ) [TaxId: 3218 ],	SCOPe (2.08)
F	d4h6cf_	All beta proteins	AOC barrel-like	Allene oxide cyclase-like	Allene oxide cyclase-like	automated matches	(Physcomitrium patens ) [TaxId: 3218 ],	SCOPe (2.08)
E	d4h6ce_	All beta proteins	AOC barrel-like	Allene oxide cyclase-like	Allene oxide cyclase-like	automated matches	(Physcomitrium patens ) [TaxId: 3218 ],	SCOPe (2.08)
D [auth B]	d4h6cb_	All beta proteins	AOC barrel-like	Allene oxide cyclase-like	Allene oxide cyclase-like	automated matches	(Physcomitrium patens ) [TaxId: 3218 ],	SCOPe (2.08)
C	d4h6cc_	All beta proteins	AOC barrel-like	Allene oxide cyclase-like	Allene oxide cyclase-like	automated matches	(Physcomitrium patens ) [TaxId: 3218 ],	SCOPe (2.08)
B [auth D]	d4h6cd_	All beta proteins	AOC barrel-like	Allene oxide cyclase-like	Allene oxide cyclase-like	automated matches	(Physcomitrium patens ) [TaxId: 3218 ],	SCOPe (2.08)
A	d4h6ca_	All beta proteins	AOC barrel-like	Allene oxide cyclase-like	Allene oxide cyclase-like	automated matches	(Physcomitrium patens ) [TaxId: 3218 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
L	SCOP2B Superfamily	Allene oxide cyclase-like	8088973	3000659	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Allene oxide cyclase-like	8088973	3000659	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Allene oxide cyclase-like	8088973	3000659	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Allene oxide cyclase-like	8088973	3000659	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Allene oxide cyclase-like	8088973	3000659	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Allene oxide cyclase-like	8088973	3000659	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Allene oxide cyclase-like	8088973	3000659	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Allene oxide cyclase-like	8088973	3000659	SCOP2B (2022-06-29)
D [auth B]	SCOP2B Superfamily	Allene oxide cyclase-like	8088973	3000659	SCOP2B (2022-06-29)
C	SCOP2 Family	Allene oxide cyclase-like	8088972	4001995	SCOP2 (2022-06-29)
C	SCOP2 Superfamily	Allene oxide cyclase-like	8088973	3000659	SCOP2 (2022-06-29)
B [auth D]	SCOP2B Superfamily	Allene oxide cyclase-like	8088973	3000659	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Allene oxide cyclase-like	8088973	3000659	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	RRM_1	e4h6cL1	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (develop294)
K	RRM_1	e4h6cK1	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (develop294)
J	RRM_1	e4h6cJ1	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (develop294)
I	RRM_1	e4h6cI1	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (develop294)
H	RRM_1	e4h6cH1	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (develop294)
G	RRM_1	e4h6cG1	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (develop294)
F	RRM_1	e4h6cF1	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (develop294)
E	RRM_1	e4h6cE1	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (develop294)
D [auth B]	RRM_1	e4h6cB1	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (develop294)
C	RRM_1	e4h6cC1	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (develop294)
B [auth D]	RRM_1	e4h6cD1	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (develop294)
A	RRM_1	e4h6cA1	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
L	2.40.480.10	Mainly Beta	Beta Barrel	AOC barrel-like	Allene oxide cyclase-like	CATH (4.3.0)
K	2.40.480.10	Mainly Beta	Beta Barrel	AOC barrel-like	Allene oxide cyclase-like	CATH (4.3.0)
J	2.40.480.10	Mainly Beta	Beta Barrel	AOC barrel-like	Allene oxide cyclase-like	CATH (4.3.0)
I	2.40.480.10	Mainly Beta	Beta Barrel	AOC barrel-like	Allene oxide cyclase-like	CATH (4.3.0)
H	2.40.480.10	Mainly Beta	Beta Barrel	AOC barrel-like	Allene oxide cyclase-like	CATH (4.3.0)
G	2.40.480.10	Mainly Beta	Beta Barrel	AOC barrel-like	Allene oxide cyclase-like	CATH (4.3.0)
F	2.40.480.10	Mainly Beta	Beta Barrel	AOC barrel-like	Allene oxide cyclase-like	CATH (4.3.0)
E	2.40.480.10	Mainly Beta	Beta Barrel	AOC barrel-like	Allene oxide cyclase-like	CATH (4.3.0)
D [auth B]	2.40.480.10	Mainly Beta	Beta Barrel	AOC barrel-like	Allene oxide cyclase-like	CATH (4.3.0)
C	2.40.480.10	Mainly Beta	Beta Barrel	AOC barrel-like	Allene oxide cyclase-like	CATH (4.3.0)
B [auth D]	2.40.480.10	Mainly Beta	Beta Barrel	AOC barrel-like	Allene oxide cyclase-like	CATH (4.3.0)
A	2.40.480.10	Mainly Beta	Beta Barrel	AOC barrel-like	Allene oxide cyclase-like	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth D], C, D [auth B], E, A, B [auth D], C, D [auth B], E, F, G, H, I, J, K, L	Allene oxide cyclase	isomerase activity intramolecular oxidoreductase activity allene-oxide cyclase activity cyclase activity catalytic activity	fatty acid metabolic process long-chain fatty acid metabolic process monocarboxylic acid biosynthetic process oxoacid metabolic process small molecule biosynthetic process jasmonic acid biosynthetic process long-chain fatty acid biosynthetic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process jasmonic acid metabolic process organic acid metabolic process organic acid biosynthetic process fatty acid biosynthetic process carboxylic acid biosynthetic process fatty acid metabolic process long-chain fatty acid metabolic process monocarboxylic acid biosynthetic process oxoacid metabolic process small molecule biosynthetic process jasmonic acid biosynthetic process long-chain fatty acid biosynthetic process carboxylic acid metabolic process lipid biosynthetic process primary metabolic process jasmonic acid metabolic process organic acid metabolic process organic acid biosynthetic process fatty acid biosynthetic process carboxylic acid biosynthetic process biosynthetic process metabolic process cellular process small molecule metabolic process monocarboxylic acid metabolic process lipid metabolic process	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure plastid organelle cytoplasm intracellular membrane-bounded organelle chloroplast

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth D], C, D [auth B], E, A, B [auth D], C, D [auth B], E, F, G, H, I, J, K, L	IPR009410	Allene oxide cyclase	Family
A, B [auth D], C, D [auth B], E, A, B [auth D], C, D [auth B], E, F, G, H, I, J, K, L	IPR044859	Allene oxide cyclase/Dirigent protein	Homologous Superfamily
A, B [auth D], C, D [auth B], E, A, B [auth D], C, D [auth B], E, F, G, H, I, J, K, L	IPR034871	Allene oxide cyclase superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.