4H5L | pdb_00004h5l

Crystal Structure of Toscana Virus Nucleocapsid Protein Hexamer

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4h5la_	All alpha proteins	Tenuivirus/Phlebovirus nucleocapsid protein-like	Tenuivirus/Phlebovirus nucleocapsid protein	Phlebovirus nucleocapsid protein	Toscana virus N protein	Tos (Toscana virus ) [TaxId: 11590 ],	SCOPe (2.08)
B	d4h5lb_	All alpha proteins	Tenuivirus/Phlebovirus nucleocapsid protein-like	Tenuivirus/Phlebovirus nucleocapsid protein	Phlebovirus nucleocapsid protein	Toscana virus N protein	Tos (Toscana virus ) [TaxId: 11590 ],	SCOPe (2.08)
C	d4h5lc_	All alpha proteins	Tenuivirus/Phlebovirus nucleocapsid protein-like	Tenuivirus/Phlebovirus nucleocapsid protein	Phlebovirus nucleocapsid protein	Toscana virus N protein	Tos (Toscana virus ) [TaxId: 11590 ],	SCOPe (2.08)
D	d4h5ld_	All alpha proteins	Tenuivirus/Phlebovirus nucleocapsid protein-like	Tenuivirus/Phlebovirus nucleocapsid protein	Phlebovirus nucleocapsid protein	Toscana virus N protein	Tos (Toscana virus ) [TaxId: 11590 ],	SCOPe (2.08)
E	d4h5le_	All alpha proteins	Tenuivirus/Phlebovirus nucleocapsid protein-like	Tenuivirus/Phlebovirus nucleocapsid protein	Phlebovirus nucleocapsid protein	Toscana virus N protein	Tos (Toscana virus ) [TaxId: 11590 ],	SCOPe (2.08)
F	d4h5lf_	All alpha proteins	Tenuivirus/Phlebovirus nucleocapsid protein-like	Tenuivirus/Phlebovirus nucleocapsid protein	Phlebovirus nucleocapsid protein	Toscana virus N protein	Tos (Toscana virus ) [TaxId: 11590 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	PepMV Coat protein-like	8089903	3002401	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	ABC_tran	e4h5lA1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: ABC_tran	ECOD (v294.1)
B	TGT	e4h5lB1	A: a/b three-layered sandwiches	X: Globin-like	H: Nucleoside diphosphate kinases	T: Nucleoside diphosphate kinases	F: TGT	ECOD (v294.1)
C	ABC_tran	e4h5lC1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: ABC_tran	ECOD (v294.1)
D	ABC_tran	e4h5lD1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: ABC_tran	ECOD (v294.1)
E	ABC_tran	e4h5lE1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: ABC_tran	ECOD (v294.1)
F	ABC_tran	e4h5lF1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: ABC_tran	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF05733	Tenuivirus/Phlebovirus nucleocapsid protein (Tenui_N)	Tenuivirus/Phlebovirus nucleocapsid protein	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Nucleoprotein	RNA binding binding nucleic acid binding	-	host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm protein-containing complex ribonucleoprotein complex host intracellular membrane-bounded organelle host cellular component host intracellular part cellular anatomical structure host cell part host intracellular region host cell nucleus other organism part host intracellular organelle host cell cytoplasm part host cell endoplasmic reticulum-Golgi intermediate compartment host cell cytoplasm protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component host cell Golgi apparatus helical viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR015971	Nucleocapsid, Phlebovirus	Family
A, B, C, D, E A, B, C, D, E, F	IPR009522	Nucleocapsid, Phlebovirus/Tenuivirus	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.