4GI7 | pdb_00004gi7

Crystal structure of Klebsiella pneumoniae pantothenate kinase in complex with a pantothenate analogue

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
H	d4gi7h_	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Phosphoribulokinase/pantothenate kinase	automated matches	(Klebsiella variicola 342 ) [TaxId: 507522 ],	SCOPe (2.08)
G	d4gi7g_	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Phosphoribulokinase/pantothenate kinase	automated matches	(Klebsiella variicola 342 ) [TaxId: 507522 ],	SCOPe (2.08)
F	d4gi7f_	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Phosphoribulokinase/pantothenate kinase	automated matches	(Klebsiella variicola 342 ) [TaxId: 507522 ],	SCOPe (2.08)
E	d4gi7e_	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Phosphoribulokinase/pantothenate kinase	automated matches	(Klebsiella variicola 342 ) [TaxId: 507522 ],	SCOPe (2.08)
D	d4gi7d_	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Phosphoribulokinase/pantothenate kinase	automated matches	(Klebsiella variicola 342 ) [TaxId: 507522 ],	SCOPe (2.08)
C [auth B]	d4gi7b_	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Phosphoribulokinase/pantothenate kinase	automated matches	(Klebsiella variicola 342 ) [TaxId: 507522 ],	SCOPe (2.08)
B [auth C]	d4gi7c_	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Phosphoribulokinase/pantothenate kinase	automated matches	(Klebsiella variicola 342 ) [TaxId: 507522 ],	SCOPe (2.08)
A	d4gi7a_	Alpha and beta proteins (a/b)	P-loop containing nucleoside triphosphate hydrolases	P-loop containing nucleoside triphosphate hydrolases	Phosphoribulokinase/pantothenate kinase	automated matches	(Klebsiella variicola 342 ) [TaxId: 507522 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	P-loop nucleotide/nucleoside kinase-like	8089809	3002021	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	P-loop nucleotide/nucleoside kinase-like	8089809	3002021	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	P-loop nucleotide/nucleoside kinase-like	8089809	3002021	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	P-loop nucleotide/nucleoside kinase-like	8089809	3002021	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	P-loop nucleotide/nucleoside kinase-like	8089809	3002021	SCOP2B (2022-06-29)
C [auth B]	SCOP2B Superfamily	P-loop nucleotide/nucleoside kinase-like	8089809	3002021	SCOP2B (2022-06-29)
B [auth C]	SCOP2B Superfamily	P-loop nucleotide/nucleoside kinase-like	8089809	3002021	SCOP2B (2022-06-29)
A	SCOP2 Family	Phosphoribulokinase/pantothenate kinase-like	8089808	4003940	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	P-loop nucleotide/nucleoside kinase-like	8089809	3002021	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	ClpB_D2-small	e4gi7H1	A: alpha bundles	X: YrdC/RibB	H: SH3	T: SH3	F: ClpB_D2-small	ECOD (develop294)
G	14-3-3	e4gi7G1	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: 14-3-3	ECOD (develop294)
F	14-3-3	e4gi7F1	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: 14-3-3	ECOD (develop294)
E	ClpB_D2-small	e4gi7E1	A: alpha bundles	X: YrdC/RibB	H: SH3	T: SH3	F: ClpB_D2-small	ECOD (develop294)
D	14-3-3	e4gi7D1	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: 14-3-3	ECOD (develop294)
C [auth B]	14-3-3	e4gi7B1	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: 14-3-3	ECOD (develop294)
B [auth C]	14-3-3	e4gi7C1	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: 14-3-3	ECOD (develop294)
A	14-3-3	e4gi7A1	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: 14-3-3	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
G	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
F	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
E	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
D	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
C [auth B]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
B [auth C]	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
A	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B [auth C], C [auth B], D, E, A, B [auth C], C [auth B], D, E, F, G, H	Pantothenate kinase	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding kinase activity transferase activity catalytic activity pantothenate kinase activity phosphotransferase activity, alcohol group as acceptor transferase activity, transferring phosphorus-containing groups	nucleoside phosphate metabolic process coenzyme A biosynthetic process primary metabolic process nucleobase-containing compound biosynthetic process purine-containing compound metabolic process nucleobase-containing compound metabolic process sulfur compound biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process nucleoside phosphate biosynthetic process phosphate-containing compound metabolic process nucleoside phosphate metabolic process coenzyme A biosynthetic process primary metabolic process nucleobase-containing compound biosynthetic process purine-containing compound metabolic process nucleobase-containing compound metabolic process sulfur compound biosynthetic process biosynthetic process organophosphate metabolic process organophosphate biosynthetic process nucleobase-containing small molecule metabolic process purine-containing compound biosynthetic process nucleoside phosphate biosynthetic process phosphate-containing compound metabolic process metabolic process cellular process small molecule metabolic process sulfur compound metabolic process phosphorus metabolic process coenzyme A metabolic process	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B [auth C], C [auth B], D, E, A, B [auth C], C [auth B], D, E, F, G, H	IPR004566	Pantothenate kinase	Family
A, B [auth C], C [auth B], D, E, A, B [auth C], C [auth B], D, E, F, G, H	IPR006083	Phosphoribulokinase/uridine kinase	Domain
A, B [auth C], C [auth B], D, E, A, B [auth C], C [auth B], D, E, F, G, H	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.