4FMO

Structure of the C-terminal domain of the Saccharomyces cerevisiae MUTL alpha (MLH1/PMS1) heterodimer bound to a fragment of exo1

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	DNA mismatch repair protein MutL	8053829	3001605	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF16413	e4fmoA1	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: DNA mismatch repair protein MutL regulatory subdomain (From Topology)	T: DNA mismatch repair protein MutL regulatory subdomain	F: PF16413	ECOD (1.6)
A	PF16413	e4fmoA2	A: a+b two layers	X: DNA mismatch repair protein MutL dimerization subdomain (From Topology)	H: DNA mismatch repair protein MutL dimerization subdomain (From Topology)	T: DNA mismatch repair protein MutL dimerization subdomain	F: PF16413	ECOD (1.6)
B	F_UNCLASSIFIED	e4fmoB2	A: a+b two layers	X: Alpha-lytic protease prodomain-like	H: DNA mismatch repair protein MutL regulatory subdomain (From Topology)	T: DNA mismatch repair protein MutL regulatory subdomain	F: F_UNCLASSIFIED	ECOD (1.6)
B	F_UNCLASSIFIED	e4fmoB1	A: a+b two layers	X: DNA mismatch repair protein MutL dimerization subdomain (From Topology)	H: DNA mismatch repair protein MutL dimerization subdomain (From Topology)	T: DNA mismatch repair protein MutL dimerization subdomain	F: F_UNCLASSIFIED	ECOD (1.6)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF16413	DNA mismatch repair protein Mlh1 C-terminus (Mlh1_C)	DNA mismatch repair protein Mlh1 C-terminus	This is the C-terminal domain of DNA mismatch repair protein Mlh1, these proteins belong to the MutL family. This domain forms part of the endonuclease active site [1].	Domain
B	PF08676	MutL C terminal dimerisation domain (MutL_C)	MutL C terminal dimerisation domain	MutL and MutS are key components of the DNA repair machinery that corrects replication errors [1]. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The ...	MutL and MutS are key components of the DNA repair machinery that corrects replication errors [1]. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The N terminal region of MutL contains the ATPase domain and the C terminal is involved in dimerisation [3].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	DNA mismatch repair protein MLH1	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding double-stranded DNA binding mismatched DNA binding nucleic acid binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity ATP-dependent activity, acting on DNA DNA damage sensor activity catalytic activity, acting on DNA small molecule sensor activity ATP-dependent DNA damage sensor activity catalytic activity, acting on a nucleic acid	sexual reproduction reproductive process meiotic cell cycle DNA recombination primary metabolic process DNA metabolic process meiotic cell cycle process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process meiosis I cell cycle process meiotic heteroduplex formation cellular process sexual reproduction reproductive process meiotic cell cycle DNA recombination primary metabolic process DNA metabolic process meiotic cell cycle process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process meiosis I cell cycle process meiotic heteroduplex formation cellular process metabolic process cell cycle macromolecule metabolic process cell cycle process cellular response to stimulus mismatch repair response to stimulus meiotic mismatch repair cellular response to stress response to stress DNA repair DNA damage response homologous recombination cellular component organization meiosis I meiotic nuclear division cellular component organization or biogenesis reciprocal homologous recombination organelle fission reciprocal meiotic recombination nuclear division organelle organization	membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex MutLalpha complex mismatch repair complex MutLgamma complex membrane-bounded organelle intracellular organelle intracellular anatomical structure mitochondrion organelle cytoplasm cellular anatomical entity intracellular membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex MutLalpha complex mismatch repair complex MutLgamma complex MutLbeta complex
B	DNA mismatch repair protein PMS1	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding organic cyclic compound binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding DNA binding double-stranded DNA binding mismatched DNA binding nucleic acid binding pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity ATP-dependent activity ATP-dependent activity, acting on DNA DNA damage sensor activity catalytic activity, acting on DNA small molecule sensor activity ATP-dependent DNA damage sensor activity catalytic activity, acting on a nucleic acid	cellular response to stimulus mismatch repair sexual reproduction response to stimulus reproductive process meiotic cell cycle process meiotic mismatch repair nucleobase-containing compound metabolic process organic substance metabolic process cellular response to stress response to stress cell cycle cell cycle process DNA repair cellular response to stimulus mismatch repair sexual reproduction response to stimulus reproductive process meiotic cell cycle process meiotic mismatch repair nucleobase-containing compound metabolic process organic substance metabolic process cellular response to stress response to stress cell cycle cell cycle process DNA repair meiotic cell cycle primary metabolic process DNA metabolic process nucleic acid metabolic process organic cyclic compound metabolic process meiosis I cell cycle process DNA damage response cellular process metabolic process macromolecule metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex intracellular membrane-bounded organelle cellular anatomical entity intracellular organelle organelle MutLalpha complex mismatch repair complex cytoplasm
C	DNA repair peptide	DNA binding binding organic cyclic compound binding nucleic acid binding 5'-flap endonuclease activity endonuclease activity catalytic activity, acting on a nucleic acid endodeoxyribonuclease activity, producing 5'-phosphomonoesters hydrolase activity DNA nuclease activity DNA endonuclease activity nuclease activity hydrolase activity, acting on ester bonds catalytic activity, acting on DNA DNA binding binding organic cyclic compound binding nucleic acid binding 5'-flap endonuclease activity endonuclease activity catalytic activity, acting on a nucleic acid endodeoxyribonuclease activity, producing 5'-phosphomonoesters hydrolase activity DNA nuclease activity DNA endonuclease activity nuclease activity hydrolase activity, acting on ester bonds catalytic activity, acting on DNA flap endonuclease activity endonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters catalytic activity 5'-3' exonuclease activity exonuclease activity DNA exonuclease activity 5'-3' DNA exonuclease activity DNA exonuclease activity, producing 5'-phosphomonoesters exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters cation binding ion binding metal ion binding small molecule binding	cellular response to stimulus double-strand break repair response to stimulus DNA double-strand break processing primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular response to stimulus double-strand break repair response to stimulus DNA double-strand break processing primary metabolic process DNA metabolic process nucleic acid metabolic process nucleobase-containing compound metabolic process organic cyclic compound metabolic process organic substance metabolic process cellular response to stress DNA damage response response to stress metabolic process cellular process macromolecule metabolic process DNA repair mismatch repair developmental process homologous recombination reproductive process reproductive process in single-celled organism DNA recombination mitotic recombination developmental process involved in reproduction mating type switching gene conversion at mating-type locus sex determination mating type determination gene conversion regulation of cellular process regulation of cell cycle phase transition signaling G2/M transition of mitotic cell cycle negative regulation of biological process negative regulation of cell cycle cell cycle phase transition intracellular signal transduction mitotic cell cycle negative regulation of mitotic cell cycle mitotic G2/M transition checkpoint cell communication regulation of mitotic cell cycle negative regulation of cellular process negative regulation of cell cycle phase transition signal transduction cell cycle regulation of cell cycle cell cycle process cell cycle G2/M phase transition regulation of biological process negative regulation of mitotic cell cycle phase transition regulation of G2/M transition of mitotic cell cycle regulation of cell cycle process biological regulation regulation of cell cycle G2/M phase transition negative regulation of cell cycle process cell cycle checkpoint signaling regulation of mitotic cell cycle phase transition mitotic cell cycle checkpoint signaling mitotic cell cycle process negative regulation of cell cycle G2/M phase transition negative regulation of G2/M transition of mitotic cell cycle mitotic cell cycle phase transition telomeric 3' overhang formation telomere organization chromosome organization telomere maintenance cellular component organization DNA strand elongation organelle organization telomere capping cellular component organization or biogenesis sexual reproduction meiotic cell cycle process meiotic DNA double-strand break processing meiotic cell cycle	intracellular anatomical structure cytoplasm cellular anatomical entity membrane-bounded organelle intracellular organelle organelle nucleus intracellular membrane-bounded organelle

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR038973	DNA mismatch repair protein MutL/Mlh/Pms-like	Family
A	IPR013507	DNA mismatch repair protein, S5 domain 2-like	Domain
A	IPR002099	DNA mismatch repair protein MutL/Mlh/PMS	Family
A	IPR036890	Histidine kinase/HSP90-like ATPase superfamily	Homologous Superfamily
A	IPR014762	DNA mismatch repair, conserved site	Conserved Site
A	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
A	IPR032189	DNA mismatch repair protein Mlh1, C-terminal	Domain
A	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
B	IPR038973	DNA mismatch repair protein MutL/Mlh/Pms-like	Family
B	IPR037198	MutL, C-terminal domain superfamily	Homologous Superfamily
B	IPR013507	DNA mismatch repair protein, S5 domain 2-like	Domain
B	IPR014790	MutL, C-terminal, dimerisation	Domain
B	IPR002099	DNA mismatch repair protein MutL/Mlh/PMS	Family
B	IPR036890	Histidine kinase/HSP90-like ATPase superfamily	Homologous Superfamily
B	IPR042121	MutL, C-terminal domain, regulatory subdomain	Homologous Superfamily
B	IPR042120	MutL, C-terminal domain, dimerisation subdomain	Homologous Superfamily
B	IPR014762	DNA mismatch repair, conserved site	Conserved Site
B	IPR020568	Ribosomal protein uS5 domain 2-type superfamily	Homologous Superfamily
B	IPR014721	Small ribosomal subunit protein uS5 domain 2-type fold, subgroup	Homologous Superfamily
C	IPR006086	XPG-I domain	Domain
C	IPR044752	Exonuclease 1-like, PIN-like domain	Domain
C	IPR029060	PIN-like domain superfamily	Homologous Superfamily
C	IPR036279	5'-3' exonuclease, C-terminal domain superfamily	Homologous Superfamily
C	IPR008918	Helix-hairpin-helix motif, class 2	Conserved Site
C	IPR019974	XPG conserved site	Conserved Site
C	IPR037315	Exonuclease-1, H3TH domain	Domain
C	IPR006085	XPG, N-terminal	Domain
C	IPR006084	XPG/Rad2 endonuclease	Family