4FHN | pdb_00004fhn

Nup37-Nup120 full-length complex from Schizosaccharomyces pombe

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Scaffolding nucleoporins	8090982	3002255	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Nucleoporin beta-propeller domain	8090975	3000456	SCOP2B (2022-06-29)
D	SCOP2 Family	Coat nucleoporins Nup120/Nup160 NTD-like	8046888	4005351	SCOP2 (2022-06-29)
D	SCOP2 Family	Nup120 CTD-like	8090981	4007717	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	Nucleoporin beta-propeller domain	8090975	3000456	SCOP2 (2022-06-29)
D	SCOP2 Superfamily	Scaffolding nucleoporins	8090982	3002255	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E [auth X]	RRM_1	e4fhnX1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
E [auth X]		e4fhnX2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: ARM repeat	T: ARM repeat	F:	ECOD (v294.1)
B	Nup160	e4fhnB1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: YrdC/RibB	T: YrdC/RibB	F: Nup160	ECOD (v294.1)
B	Helicase_C	e4fhnB2	A: a/b three-layered sandwiches	X: YrdC/RibB	H: YrdC/RibB	T: YrdC/RibB	F: Helicase_C	ECOD (v294.1)
D	Nup160	e4fhnD1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Fibronectin type I module-like	T: Fibronectin type I module	F: Nup160	ECOD (v294.1)
D	SRP54_N	e4fhnD3	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: Fibronectin type I module-like	T: Fibronectin type I module	F: SRP54_N	ECOD (v294.1)
A	HRM	e4fhnA1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: YrdC/RibB	T: YrdC/RibB	F: HRM	ECOD (v294.1)
C	WD40	e4fhnC2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: WD40	ECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
E [auth X]	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain (ELFV_dehydrog_N)	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain		Domain
E [auth X]	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase (ELFV_dehydrog)	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase		Domain
B, D	PF21486	Nucleoporin NUP120, helical domain (NUP120_helical)	Nucleoporin NUP120, helical domain	This entry represents the helical domain of Nup120 from S. pombe referred to as the irregular helical bundle (IHB) [1,2], which makes extensive contacts with the propeller and helical bundle at the N-terminal. Nup120 functions as a component of the n ...	This entry represents the helical domain of Nup120 from S. pombe referred to as the irregular helical bundle (IHB) [1,2], which makes extensive contacts with the propeller and helical bundle at the N-terminal. Nup120 functions as a component of the nuclear pore complex (NPC). Deletion of this gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth.	Domain
B, D	PF23300	Nucleoporin Nup120, HEAT repeats (HEAT_Nup120)	Nucleoporin Nup120, HEAT repeats	-	Repeat
B, D	PF11715	Nucleoporin Nup120/160, beta-propeller domain (Beta-prop_Nup120_160)	Nucleoporin Nup120/160, beta-propeller domain	-	Repeat
A, C	PF00400	WD domain, G-beta repeat (WD40)	WD domain, G-beta repeat	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E [auth X]	Glutamate dehydrogenase	binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding oxidoreductase activity, acting on the CH-NH2 group of donors amino-acid dehydrogenase [NAD(P)+] activity L-glutamate dehydrogenase (NADP+) activity oxidoreductase activity L-glutamate dehydrogenase [NAD(P)+] activity oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor catalytic activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol
B, D	Nucleoporin nup120	structural molecule activity structural constituent of nuclear pore	cellular localization nitrogen compound transport nucleocytoplasmic transport transport nuclear transport mRNA transport localization mRNA export from nucleus establishment of localization in cell RNA localization nuclear export nucleobase-containing compound transport RNA transport nucleic acid transport cellular localization nitrogen compound transport nucleocytoplasmic transport transport nuclear transport mRNA transport localization mRNA export from nucleus establishment of localization in cell RNA localization nuclear export nucleobase-containing compound transport RNA transport nucleic acid transport poly(A)+ mRNA export from nucleus intracellular transport gene expression establishment of localization macromolecule biosynthetic process RNA export from nucleus establishment of RNA localization biosynthetic process macromolecule localization cellular process metabolic process macromolecule metabolic process	membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex nuclear pore outer ring intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure organelle nuclear envelope nuclear pore membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex nuclear pore outer ring intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure organelle nuclear envelope nuclear pore membrane-enclosed lumen intracellular organelle lumen organelle lumen nuclear periphery nuclear lumen
A, C	NUCLEOPORIN NUP37	-	localization cellular localization nucleocytoplasmic transport transport nuclear transport establishment of localization in cell intracellular transport cellular process establishment of localization	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex nuclear pore outer ring intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex nuclear pore outer ring intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope organelle nuclear envelope nuclear pore

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E [auth X]	IPR006095	Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase	Family
E [auth X]	IPR046346	Aminoacid dehydrogenase-like, N-terminal domain superfamily	Homologous Superfamily
E [auth X]	IPR006096	Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase, C-terminal	Domain
E [auth X]	IPR050724	Glutamate/Leucine/Phenylalanine/Valine dehydrogenases	Family
E [auth X]	IPR006097	Glutamate/phenylalanine/leucine/valine/L-tryptophan dehydrogenase, dimerisation domain	Domain
E [auth X]	IPR014362	Glutamate dehydrogenase	Family
E [auth X]	IPR033524	Leu/Phe/Val dehydrogenases active site	Active Site
E [auth X]	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
E [auth X]	IPR033922	NAD(P) binding domain of glutamate dehydrogenase	Domain
B, D	IPR056548	Nucleoporin nup120-like, HEAT repeat domain, fungal	Domain
B, D	IPR059141	Nucleoporin Nup120/160, beta-propeller domain	Domain
B, D	IPR021717	Nucleoporin Nup120/160	Family
B, D	IPR048884	Nucleoporin Nup120, helical domain, fungal	Domain
A, C	IPR037626	Nucleoporin Nup37	Family
A, C	IPR001680	WD40 repeat	Repeat
A, C	IPR036322	WD40-repeat-containing domain superfamily	Homologous Superfamily
A, C	IPR015943	WD40/YVTN repeat-like-containing domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.