4F28 | pdb_00004f28

The Crystal Structure of a Human MitoNEET mutant with Met 62 Replaced by a Gly

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d4f28b_	Small proteins	Iron-sulfur cluster-binding zinc finger CDGSH type	Iron-sulfur cluster-binding zinc finger CDGSH type	Outer mitochondrial membrane protein mitoNEET-like	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d4f28a_	Small proteins	Iron-sulfur cluster-binding zinc finger CDGSH type	Iron-sulfur cluster-binding zinc finger CDGSH type	Outer mitochondrial membrane protein mitoNEET-like	automated matches	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	CISD-like	8052383	3002112	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	CISD-like	8052383	3002112	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Tubulin	e4f28B2	A: a/b three-layered sandwiches	X: POZ domain	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Tubulin	ECOD (v294.1)
A	Tubulin	e4f28A2	A: a/b three-layered sandwiches	X: POZ domain	H: Rossmann-related	T: S-adenosyl-L-methionine-dependent methyltransferases	F: Tubulin	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.5.90	Alpha Beta	3-Layer(aba) Sandwich	Ribosomal Protein L9	domain 1	CATH (4.3.0)
A	3.40.5.90	Alpha Beta	3-Layer(aba) Sandwich	Ribosomal Protein L9	domain 1	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	CDGSH iron-sulfur domain-containing protein 1	transferase activity, transferring nitrogenous groups transaminase activity amino acid transaminase activity transferase activity L-cysteine:2-oxoglutarate transaminase activity catalytic activity identical protein binding protein binding binding protein homodimerization activity protein dimerization activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding metal cluster binding transferase activity, transferring nitrogenous groups transaminase activity amino acid transaminase activity transferase activity L-cysteine:2-oxoglutarate transaminase activity catalytic activity identical protein binding protein binding binding protein homodimerization activity protein dimerization activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding metal cluster binding small molecule binding vitamin binding vitamin B6 binding pyridoxal phosphate binding ion binding anion binding heterocyclic compound binding cation binding metal ion binding	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis biosynthetic process metabolic process cellular process primary metabolic process intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis biosynthetic process metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process gene expression macromolecule biosynthetic process protein maturation regulation of biological process catabolic process regulation of cellular process autophagy biological regulation regulation of catabolic process regulation of autophagy process utilizing autophagic mechanism regulation of metabolic process cellular respiration energy derivation by oxidation of organic compounds regulation of generation of precursor metabolites and energy generation of precursor metabolites and energy regulation of cellular respiration	membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane membrane organelle outer membrane organelle envelope bounding membrane of organelle mitochondrial envelope membrane-bounded organelle intracellular organelle cellular anatomical structure intracellular anatomical structure mitochondrion organelle cytoplasm intracellular membrane-bounded organelle mitochondrial membrane membrane organelle outer membrane organelle envelope bounding membrane of organelle mitochondrial envelope mitochondrial outer membrane outer membrane organelle membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR018967	Iron-binding zinc finger, CDGSH type	Domain
A, B	IPR019610	Iron sulphur domain-containing, mitoNEET, N-terminal	Domain
A, B	IPR045131	CDGSH iron-sulfur domain-containing protein 1/2	Family
A, B	IPR042216	MitoNEET, CDGSH iron-sulfur domain	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q9NZ45	primitive neuroectodermal tumor Treatment Refractory Type 2 Diabetes Mellitus acute myeloid leukemia breast cancer glioblastoma large cell medulloblastoma malignant ependymoma Pick disease type 2 diabetes mellitus astrocytic tumor Crohn disease inflammatory bowel disease lung cancer malignant glioma polycystic ovary syndrome primitive neuroectodermal tumor Treatment Refractory Type 2 Diabetes Mellitus acute myeloid leukemia breast cancer glioblastoma large cell medulloblastoma malignant ependymoma Pick disease type 2 diabetes mellitus astrocytic tumor Crohn disease inflammatory bowel disease lung cancer malignant glioma polycystic ovary syndrome atypical teratoid rhabdoid tumor Emery-Dreifuss muscular dystrophy lung carcinoma medulloblastoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.