4EJQ | pdb_00004ejq

Crystal structure of KIF1A C-CC1-FHA

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
H	SCOP2B Superfamily	SMAD/FHA domain-like	8065242	3000137	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	SMAD/FHA domain-like	8065242	3000137	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	SMAD/FHA domain-like	8065242	3000137	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	SMAD/FHA domain-like	8065242	3000137	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	SMAD/FHA domain-like	8065242	3000137	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SMAD/FHA domain-like	8065242	3000137	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	SMAD/FHA domain-like	8065242	3000137	SCOP2B (2022-06-29)
A	SCOP2 Family	FHA domain	8065241	4002605	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	SMAD/FHA domain-like	8065242	3000137	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
H	FtsJ	e4ejqH1	A: a/b three-layered sandwiches	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: FtsJ	ECOD (v294.1)
G	FtsJ	e4ejqG1	A: a/b three-layered sandwiches	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: FtsJ	ECOD (v294.1)
F	MIR	e4ejqF1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: SAM/DNA-glycosylase	T: SAM domain-like	F: MIR	ECOD (v294.1)
E	MIR	e4ejqE1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: SAM/DNA-glycosylase	T: SAM domain-like	F: MIR	ECOD (v294.1)
D	MIR	e4ejqD1	A: a/b three-layered sandwiches	X: Lipocalins/Streptavidin	H: SAM/DNA-glycosylase	T: SAM domain-like	F: MIR	ECOD (v294.1)
C	FtsJ	e4ejqC1	A: a/b three-layered sandwiches	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: FtsJ	ECOD (v294.1)
B	FtsJ	e4ejqB1	A: a/b three-layered sandwiches	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: FtsJ	ECOD (v294.1)
A	FtsJ	e4ejqA1	A: a/b three-layered sandwiches	X: beta-Grasp	H: Ubiquitin-related	T: Ubiquitin-like	F: FtsJ	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
H	6.10.250.2530	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
H	2.60.200.20	Mainly Beta	Sandwich	Tumour Suppressor Smad4		CATH (4.3.0)
G	6.10.250.2530	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
G	2.60.200.20	Mainly Beta	Sandwich	Tumour Suppressor Smad4		CATH (4.3.0)
F	6.10.250.2530	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
F	2.60.200.20	Mainly Beta	Sandwich	Tumour Suppressor Smad4		CATH (4.3.0)
E	6.10.250.2530	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
E	2.60.200.20	Mainly Beta	Sandwich	Tumour Suppressor Smad4		CATH (4.3.0)
D	6.10.250.2530	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
D	2.60.200.20	Mainly Beta	Sandwich	Tumour Suppressor Smad4		CATH (4.3.0)
C	6.10.250.2530	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
C	2.60.200.20	Mainly Beta	Sandwich	Tumour Suppressor Smad4		CATH (4.3.0)
B	6.10.250.2530	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
B	2.60.200.20	Mainly Beta	Sandwich	Tumour Suppressor Smad4		CATH (4.3.0)
A	6.10.250.2530	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
A	2.60.200.20	Mainly Beta	Sandwich	Tumour Suppressor Smad4		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H	PF16183	Kinesin-associated (Kinesin_assoc)	Kinesin-associated	-	Family
A, B, C, D, E A, B, C, D, E, F, G, H	PF00498	FHA domain (FHA)	FHA domain	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H	Kinesin-like protein KIF1A	cytoskeletal motor activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding cytoskeletal motor activity binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cytoskeletal protein binding microtubule binding protein binding tubulin binding plus-end-directed microtubule motor activity microtubule motor activity polypeptide conformation or assembly isomerase activity isomerase activity macromolecular conformation isomerase activity catalytic activity ATP-dependent activity pyrophosphatase activity ATP hydrolysis activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides cation binding metal ion binding identical protein binding	vesicle cytoskeletal trafficking vesicle localization establishment of organelle localization cellular localization dense core granule transport transport establishment of vesicle localization intracellular transport dense core granule cytoskeletal transport establishment of localization localization dense core granule localization organelle localization cytosolic transport establishment of localization in cell vesicle cytoskeletal trafficking vesicle localization establishment of organelle localization cellular localization dense core granule transport transport establishment of vesicle localization intracellular transport dense core granule cytoskeletal transport establishment of localization localization dense core granule localization organelle localization cytosolic transport establishment of localization in cell secretory granule localization cytoskeleton-dependent intracellular transport cellular process multicellular organismal process regulation of cellular process cell projection organization neuron projection development multicellular organism development cell projection morphogenesis neuron differentiation neuron projection morphogenesis cell differentiation anatomical structure development regulation of synapse structure or activity synapse organization regulation of biological quality dendritic spine morphogenesis system development developmental process dendritic spine development regulation of biological process postsynapse organization dendritic spine organization regulation of cell projection organization regulation of postsynapse organization nervous system development generation of neurons regulation of neuron projection development regulation of cellular component organization cellular developmental process regulation of developmental process plasma membrane bounded cell projection morphogenesis cell development cell morphogenesis cellular component organization neurogenesis dendrite development cellular component organization or biogenesis regulation of anatomical structure morphogenesis plasma membrane bounded cell projection organization biological regulation dendrite morphogenesis cell morphogenesis involved in neuron differentiation anatomical structure morphogenesis regulation of synapse organization cell junction organization neuron development regulation of dendritic spine morphogenesis neuron projection organization regulation of plasma membrane bounded cell projection organization anterograde axonal transport axonal transport axo-dendritic transport microtubule-based transport transport along microtubule microtubule-based movement microtubule-based process regulation of dendritic spine development organelle transport along microtubule retrograde neuronal dense core vesicle transport vesicle transport along microtubule retrograde axonal transport anterograde neuronal dense core vesicle transport vesicle-mediated transport	membrane-bounded organelle intracellular anatomical structure dense core granule intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle membrane-bounded organelle intracellular anatomical structure dense core granule intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle neuronal dense core vesicle protein-containing complex intracellular membraneless organelle cytoskeleton membraneless organelle microtubule associated complex kinesin complex microtubule cytoskeleton somatodendritic compartment cell projection dendrite dendritic tree neuron projection plasma membrane bounded cell projection bounding membrane of organelle vesicle membrane neuronal dense core vesicle membrane membrane cytoplasmic vesicle membrane dense core granule membrane organelle membrane secretory granule membrane synapse cell junction perinuclear region of cytoplasm axon polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex neuron projection cytoplasm axon cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H	IPR036961	Kinesin motor domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001752	Kinesin motor domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR001849	Pleckstrin homology domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR049780	Kinesin-like protein KIF1A/B, pleckstrin homology domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR011993	PH-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR049779	Kinesin-like protein KIF1A, forkhead associated domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR032405	Kinesin-associated	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR022164	Kinesin-like	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR008984	SMAD/FHA domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H	IPR000253	Forkhead-associated (FHA) domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR022140	Kinesin-like KIF1-type	Domain
A, B, C, D, E A, B, C, D, E, F, G, H	IPR019821	Kinesin motor domain, conserved site	Conserved Site

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D, E A, B, C, D, E, F, G, H	Pharos: Q12756	hereditary spastic paraplegia 30 intellectual disability, autosomal dominant 9 neuropathy, hereditary sensory, type 2C neuropathy, hereditary sensory and autonomic, type 2A diabetes mellitus peripheral neuropathy hereditary spastic paraplegia intellectual disability PEHO syndrome hereditary sensory and autonomic neuropathy type 2 malignant ependymoma medulloblastoma osteosarcoma ankylosing spondylitis pancreatic intraductal papillary-mucinous carcinoma hereditary spastic paraplegia 30 intellectual disability, autosomal dominant 9 neuropathy, hereditary sensory, type 2C neuropathy, hereditary sensory and autonomic, type 2A diabetes mellitus peripheral neuropathy hereditary spastic paraplegia intellectual disability PEHO syndrome hereditary sensory and autonomic neuropathy type 2 malignant ependymoma medulloblastoma osteosarcoma ankylosing spondylitis pancreatic intraductal papillary-mucinous carcinoma Charcot-Marie-Tooth disease paraplegia Hereditary Motor and Sensory-Neuropathy Type II Riley-Day syndrome ulcerative colitis lung cancer malignant glioma Morvan syndrome ovarian cancer atypical teratoid rhabdoid tumor pancreatic intraductal papillary-mucinous neoplasm Crohn disease pilocytic astrocytoma sclerosing cholangitis lung carcinoma malignant mesothelioma neurodegenerative disease autism pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia developmental disability peripheral nervous system disease glioblastoma inflammatory bowel disease large cell medulloblastoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.