Crystal Structure of XV19 TCR in complex with CD1d-sulfatide C24:1
Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage
Domain Annotation: SCOP2 Classification SCOP2 Database Homepage
| Chains | Type | Family Name | Domain Identifier | Family Identifier | Provenance Source (Version) |
|---|---|---|---|---|---|
| F | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054571 | 3000071 | SCOP2B (2022-06-29) |
| B | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054571 | 3000071 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | MHC antigen-recognition domain | 8037146 | 3000521 | SCOP2B (2022-06-29) |
| E | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054657 | 3000071 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | MHC antigen-recognition domain | 8037146 | 3000521 | SCOP2B (2022-06-29) |
| A | SCOP2B Superfamily | Immunoglobulin (Ig) domain-like | 8054657 | 3000071 | SCOP2B (2022-06-29) |
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| H | V-set | e4ei5H3 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| D | V-set | e4ei5D3 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| G | ig | e4ei5G3 | A: alpha bundles | X: Fusion glycoprotein F2 | H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | F: ig | ECOD (develop294) |
| C | EF-hand_1,S_100 | e4ei5C1 | A: alpha bundles | X: Flavodoxin-like | H: SH3 | T: SH3 | F: EF-hand_1,S_100 | ECOD (develop294) |
| F | RRM_1 | e4ei5F1 | A: alpha bundles | X: beta-Grasp | H: HTH | T: winged helix domain | F: RRM_1 | ECOD (develop294) |
| B | EF-hand_1,S_100 | e4ei5B1 | A: alpha bundles | X: Flavodoxin-like | H: SH3 | T: SH3 | F: EF-hand_1,S_100 | ECOD (develop294) |
| E | V-set | e4ei5E3 | A: alpha bundles | X: Subtilisin-like | H: Subtilisin-like | T: Subtilisin-like | F: V-set | ECOD (develop294) |
| A | V-set | e4ei5A3 | A: alpha bundles | X: Fusion glycoprotein F2 | H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase | F: V-set | ECOD (develop294) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| H | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| D | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| G | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| C | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| F | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| B | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| E | 3.30.500.10 | Alpha Beta | 2-Layer Sandwich | Murine Class I Major Histocompatibility Complex, H2-DB | Chain A, domain 1 | CATH (4.3.0) |
| E | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
| A | 3.30.500.10 | Alpha Beta | 2-Layer Sandwich | Murine Class I Major Histocompatibility Complex, H2-DB | Chain A, domain 1 | CATH (4.3.0) |
| A | 2.60.40.10 | Mainly Beta | Sandwich | Immunoglobulin-like | Immunoglobulins | CATH (4.3.0) |
IMGT Antibody Annotation IMGT Database Homepage
| Chain | Protein Name | Description | Organism Name | Gene Allele Name(s) | Domain Name(s) | Receptor Type | Receptor Description | Provenance Source |
|---|---|---|---|---|---|---|---|---|
| TR XV19 Type II NKT TRAV7D-4*01-TRAJ26*01, TARBV3*01 | TR-BETA-2 | Chimeric (chimeric) | TRBV3*01, TRBJ2-1*01, TRBC2*01, TRBC2*02 | V-DOMAIN V-BETA, C-DOMAIN C-BETA-2 | TR | TR-ALPHA_BETA-2 | IMGT (202610-0) | |
| TR XV19 Type II NKT TRAV7D-4*01-TRAJ26*01, TARBV3*01 | TR-ALPHA | Chimeric (chimeric) | TRAV7D-4*01, TRAV7D-4*02, TRAV7-4*02, TRAJ26*01, TRAC*01 | V-DOMAIN V-ALPHA, C-DOMAIN C-ALPHA | TR | TR-ALPHA_BETA-2 | IMGT (202610-0) | |
| CD1D1 | B2M | Mus musculus (house mouse) | B2M*01 | C-LIKE-DOMAIN C-LIKE | RPI-MH1Like | MH1LIKE-ALPHA-LIKE_B2M | IMGT (202610-0) | |
| CD1D1 | I-ALPHA-LIKE | Mus musculus (house mouse) | CD1D1*01 | G-DOMAIN G-ALPHA1-LIKE, G-DOMAIN G-ALPHA2-LIKE | RPI-MH1Like | MH1LIKE-ALPHA-LIKE_B2M | IMGT (202610-0) |
Protein Family Annotation Pfam Database Homepage
| Chains | Accession | Name | Description | Comments | Source |
|---|---|---|---|---|---|
| PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | Domain | ||
| PF07654 | Immunoglobulin C1-set domain (C1-set) | Immunoglobulin C1-set domain | Domain |
Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily | |
| IPR003006 | Immunoglobulin/major histocompatibility complex, conserved site | Conserved Site | |
| IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
| IPR007110 | Immunoglobulin-like domain | Domain | |
| IPR050160 | Major Histocompatibility Complex/Immunoglobulin | Family | |
| IPR003597 | Immunoglobulin C1-set | Domain | |
| IPR015707 | Beta-2-Microglobulin | Family | |
| IPR036179 | Immunoglobulin-like domain superfamily | Homologous Superfamily | |
| IPR050208 | Antigen-presenting and immune regulatory MHC class I-related | Family | |
| IPR003597 | Immunoglobulin C1-set | Domain | |
| IPR011161 | MHC class I-like antigen recognition-like | Domain | |
| IPR011162 | MHC classes I/II-like antigen recognition protein | Homologous Superfamily | |
| IPR037055 | MHC class I-like antigen recognition-like superfamily | Homologous Superfamily | |
| IPR013783 | Immunoglobulin-like fold | Homologous Superfamily | |
| IPR007110 | Immunoglobulin-like domain | Domain |














