4EE6 | pdb_00004ee6

Crystal Structure of the Novel Phenazine Prenyltransferase EpzP (methylated)

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d4ee6b_	Alpha and beta proteins (a+b)	Antiparallel beta/alpha barrel (PT-barrel)	Prenyltransferase-like	automated matches	automated matches	(Streptomyces virginiae ) [TaxId: 1961 ],	SCOPe (2.08)
A	d4ee6a_	Alpha and beta proteins (a+b)	Antiparallel beta/alpha barrel (PT-barrel)	Prenyltransferase-like	automated matches	automated matches	(Streptomyces virginiae ) [TaxId: 1961 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	Aromatic prenyltransferase Orf2-like	8053371	4003790	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Prenyltransferase-like	8053372	3001496	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Prenyltransferase-like	8053372	3001496	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e4ee6B1	A: beta-Grasp	X: Ubiquitin-related	H: Ubiquitin-like	T: ABC_tran	F:	ECOD (20:10:01)
A		e4ee6A1	A: beta-Grasp	X: Ubiquitin-related	H: Ubiquitin-like	T: ABC_tran	F:	ECOD (20:10:01)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B	Prenyltransferase	prenyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity	-	-
A	Prenyltransferase	prenyltransferase activity transferase activity transferase activity, transferring alkyl or aryl (other than methyl) groups catalytic activity	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B	IPR036239	Prenyltransferase-like superfamily	Homologous Superfamily
B	IPR033964	Aromatic prenyltransferase	Family
B	IPR020965	Aromatic prenyltransferase, CloQ-type	Family
A	IPR036239	Prenyltransferase-like superfamily	Homologous Superfamily
A	IPR033964	Aromatic prenyltransferase	Family
A	IPR020965	Aromatic prenyltransferase, CloQ-type	Family

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
B	MLY	Parent Component: LYS RESID: AA0075 PSI-MOD : N6,N6-dimethyl-L-lysine MOD:00084
A	MLY	Parent Component: LYS RESID: AA0075 , AA0075 PSI-MOD : N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084
A	MLZ	Parent Component: LYS RESID: AA0075 , AA0075 , AA0076 PSI-MOD : N6,N6-dimethyl-L-lysine MOD:00084 , N6,N6-dimethyl-L-lysine MOD:00084 , N6-methyl-L-lysine MOD:00085

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.