4EC6 | pdb_00004ec6

Ntf2-like, potential transfer protein TraM from Gram-positive conjugative plasmid pIP501

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
F	TraM-like	e4ec6F1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: TraM-like	ECOD (1.6)
E	TraM-like	e4ec6E1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: TraM-like	ECOD (1.6)
D	TraM-like	e4ec6D1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: TraM-like	ECOD (1.6)
C	TraM-like	e4ec6C1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: TraM-like	ECOD (1.6)
B	TraM-like	e4ec6B1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: TraM-like	ECOD (1.6)
A	TraM-like	e4ec6A1	A: a+b two layers	X: Cystatin-like	H: NTF2-like (From Topology)	T: NTF2-like	F: TraM-like	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	3.10.450.540	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
E	3.10.450.540	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
D	3.10.450.540	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
C	3.10.450.540	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
B	3.10.450.540	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)
A	3.10.450.540	Alpha Beta	Roll	Nuclear Transport Factor 2	Chain: A,	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F	PF21497	Conjugal transfer protein-like, C-terminal domain (TcpC-like_C)	Conjugal transfer protein-like, C-terminal domain	This domain is found at the C-terminal end of Conjugal transfer protein from Clostridium perfringens (TcpC) and similar proteins predominantly found in enterobacteria. TcpC is essential for efficient conjugative transfer. Its structure is similar to ...	This domain is found at the C-terminal end of Conjugal transfer protein from Clostridium perfringens (TcpC) and similar proteins predominantly found in enterobacteria. TcpC is essential for efficient conjugative transfer. Its structure is similar to this of TraM from Enterococcus and the conjugative type IV secretion systems (T4SS) VirB8 proteins from Agrobacterium tumefaciens. The region represented in this entry contains two NTF2-like domains separated by a seven-amino acid linker [1,2].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F	Putative uncharacterized protein	-	-	cellular anatomical structure membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F	IPR049464	Conjugal transfer protein-like, C-terminal domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.