4E4J | pdb_00004e4j

Crystal structure of arginine deiminase from Mycoplasma penetrans

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4e4ja_	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Malacoplasma penetrans HF-2 ) [TaxId: 272633 ],	SCOPe (2.08)
B	d4e4jb_	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Malacoplasma penetrans HF-2 ) [TaxId: 272633 ],	SCOPe (2.08)
C	d4e4jc_	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Malacoplasma penetrans HF-2 ) [TaxId: 272633 ],	SCOPe (2.08)
D	d4e4jd_	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Malacoplasma penetrans HF-2 ) [TaxId: 272633 ],	SCOPe (2.08)
E	d4e4je_	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Malacoplasma penetrans HF-2 ) [TaxId: 272633 ],	SCOPe (2.08)
F	d4e4jf_	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Malacoplasma penetrans HF-2 ) [TaxId: 272633 ],	SCOPe (2.08)
G	d4e4jg_	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Malacoplasma penetrans HF-2 ) [TaxId: 272633 ],	SCOPe (2.08)
H	d4e4jh_	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Malacoplasma penetrans HF-2 ) [TaxId: 272633 ],	SCOPe (2.08)
I	d4e4ji_	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Malacoplasma penetrans HF-2 ) [TaxId: 272633 ],	SCOPe (2.08)
J	d4e4jj_	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Malacoplasma penetrans HF-2 ) [TaxId: 272633 ],	SCOPe (2.08)
K	d4e4jk_	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Malacoplasma penetrans HF-2 ) [TaxId: 272633 ],	SCOPe (2.08)
L	d4e4jl_	Alpha and beta proteins (a+b)	Pentein, beta/alpha-propeller	Pentein	automated matches	automated matches	(Malacoplasma penetrans HF-2 ) [TaxId: 272633 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Arginine deiminase	8077442	4001564	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Pentein	8077443	3000640	SCOP2 (2022-06-29)
B	SCOP2B Superfamily	Pentein	8077443	3000640	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Pentein	8077443	3000640	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Pentein	8077443	3000640	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Pentein	8077443	3000640	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Pentein	8077443	3000640	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Pentein	8077443	3000640	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Pentein	8077443	3000640	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Pentein	8077443	3000640	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Pentein	8077443	3000640	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Pentein	8077443	3000640	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Pentein	8077443	3000640	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	RIP	e4e4jA1	A: a/b three-layered sandwiches	X: Globin-like	H: Nucleoside diphosphate kinases	T: Nucleoside diphosphate kinases	F: RIP	ECOD (v294.1)
B	Pkinase	e4e4jB2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Pkinase	ECOD (v294.1)
C	Pkinase	e4e4jC2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Pkinase	ECOD (v294.1)
D	Pkinase	e4e4jD2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Pkinase	ECOD (v294.1)
E	Pkinase	e4e4jE2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Pkinase	ECOD (v294.1)
F	Pkinase	e4e4jF2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Pkinase	ECOD (v294.1)
G	Pkinase	e4e4jG2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Pkinase	ECOD (v294.1)
H	Pkinase	e4e4jH2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Pkinase	ECOD (v294.1)
I	Pkinase	e4e4jI2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Pkinase	ECOD (v294.1)
J	Pkinase	e4e4jJ2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Pkinase	ECOD (v294.1)
K	Pkinase	e4e4jK2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Pkinase	ECOD (v294.1)
L	Pkinase	e4e4jL2	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Pkinase	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
A	1.10.3930.10	Mainly Alpha	Orthogonal Bundle	Pentein	Arginine deiminase	CATH (4.3.0)
B	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
B	1.10.3930.10	Mainly Alpha	Orthogonal Bundle	Pentein	Arginine deiminase	CATH (4.3.0)
C	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
C	1.10.3930.10	Mainly Alpha	Orthogonal Bundle	Pentein	Arginine deiminase	CATH (4.3.0)
D	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
D	1.10.3930.10	Mainly Alpha	Orthogonal Bundle	Pentein	Arginine deiminase	CATH (4.3.0)
E	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
E	1.10.3930.10	Mainly Alpha	Orthogonal Bundle	Pentein	Arginine deiminase	CATH (4.3.0)
F	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
F	1.10.3930.10	Mainly Alpha	Orthogonal Bundle	Pentein	Arginine deiminase	CATH (4.3.0)
G	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
G	1.10.3930.10	Mainly Alpha	Orthogonal Bundle	Pentein	Arginine deiminase	CATH (4.3.0)
H	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
H	1.10.3930.10	Mainly Alpha	Orthogonal Bundle	Pentein	Arginine deiminase	CATH (4.3.0)
I	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
I	1.10.3930.10	Mainly Alpha	Orthogonal Bundle	Pentein	Arginine deiminase	CATH (4.3.0)
J	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
J	1.10.3930.10	Mainly Alpha	Orthogonal Bundle	Pentein	Arginine deiminase	CATH (4.3.0)
K	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
K	1.10.3930.10	Mainly Alpha	Orthogonal Bundle	Pentein	Arginine deiminase	CATH (4.3.0)
L	3.75.10.10	Alpha Beta	5-stranded Propeller	L-arginine/glycine Amidinotransferase	Chain A	CATH (4.3.0)
L	1.10.3930.10	Mainly Alpha	Orthogonal Bundle	Pentein	Arginine deiminase	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF02274	Arginine deiminase (ADI)	Arginine deiminase	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Arginine deiminase	arginine deiminase activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines hydrolase activity catalytic activity hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	-	-