Crystal Structure of the periplasmic domain of mutant FepE LPS O-antigen chain length regulator protein


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Id4e2li_ Alpha and beta proteins (a+b) Ferredoxin-like Bacterial polysaccharide co-polymerase-like FepE-like automated matches (Escherichia coli O157:H7 ) [TaxId: 83334 ], (Escherichia coli O157:H7 ) [TaxId: 83334 ], SCOPe (2.08)
Hd4e2lh_ Alpha and beta proteins (a+b) Ferredoxin-like Bacterial polysaccharide co-polymerase-like FepE-like automated matches (Escherichia coli O157:H7 ) [TaxId: 83334 ], (Escherichia coli O157:H7 ) [TaxId: 83334 ], SCOPe (2.08)
Gd4e2lg_ Alpha and beta proteins (a+b) Ferredoxin-like Bacterial polysaccharide co-polymerase-like FepE-like automated matches (Escherichia coli O157:H7 ) [TaxId: 83334 ], (Escherichia coli O157:H7 ) [TaxId: 83334 ], SCOPe (2.08)
Fd4e2lf_ Alpha and beta proteins (a+b) Ferredoxin-like Bacterial polysaccharide co-polymerase-like FepE-like automated matches (Escherichia coli O157:H7 ) [TaxId: 83334 ], (Escherichia coli O157:H7 ) [TaxId: 83334 ], SCOPe (2.08)
Ed4e2le_ Alpha and beta proteins (a+b) Ferredoxin-like Bacterial polysaccharide co-polymerase-like FepE-like automated matches (Escherichia coli O157:H7 ) [TaxId: 83334 ], (Escherichia coli O157:H7 ) [TaxId: 83334 ], SCOPe (2.08)
Dd4e2ld_ Alpha and beta proteins (a+b) Ferredoxin-like Bacterial polysaccharide co-polymerase-like FepE-like automated matches (Escherichia coli O157:H7 ) [TaxId: 83334 ], (Escherichia coli O157:H7 ) [TaxId: 83334 ], SCOPe (2.08)
Cd4e2lc_ Alpha and beta proteins (a+b) Ferredoxin-like Bacterial polysaccharide co-polymerase-like FepE-like automated matches (Escherichia coli O157:H7 ) [TaxId: 83334 ], (Escherichia coli O157:H7 ) [TaxId: 83334 ], SCOPe (2.08)
Bd4e2lb_ Alpha and beta proteins (a+b) Ferredoxin-like Bacterial polysaccharide co-polymerase-like FepE-like automated matches (Escherichia coli O157:H7 ) [TaxId: 83334 ], (Escherichia coli O157:H7 ) [TaxId: 83334 ], SCOPe (2.08)
Ad4e2la_ Alpha and beta proteins (a+b) Ferredoxin-like Bacterial polysaccharide co-polymerase-like FepE-like automated matches (Escherichia coli O157:H7 ) [TaxId: 83334 ], (Escherichia coli O157:H7 ) [TaxId: 83334 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ISCOP2B SuperfamilyBacterial polysaccharide co-polymerase-like 8038973 3000641 SCOP2B (2022-06-29)
HSCOP2B SuperfamilyBacterial polysaccharide co-polymerase-like 8038973 3000641 SCOP2B (2022-06-29)
GSCOP2B SuperfamilyBacterial polysaccharide co-polymerase-like 8038973 3000641 SCOP2B (2022-06-29)
FSCOP2B SuperfamilyBacterial polysaccharide co-polymerase-like 8038973 3000641 SCOP2B (2022-06-29)
ESCOP2B SuperfamilyBacterial polysaccharide co-polymerase-like 8038973 3000641 SCOP2B (2022-06-29)
DSCOP2B SuperfamilyBacterial polysaccharide co-polymerase-like 8038973 3000641 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyBacterial polysaccharide co-polymerase-like 8038973 3000641 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyBacterial polysaccharide co-polymerase-like 8038973 3000641 SCOP2B (2022-06-29)
ASCOP2B SuperfamilyBacterial polysaccharide co-polymerase-like 8038973 3000641 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
IP-loop_SecAe4e2lI1 A: a/b three-layered sandwichesX: jelly-rollH: Double-stranded beta-helixT: Double-stranded beta-helixF: P-loop_SecAECOD (v294.1)
HP-loop_SecAe4e2lH1 A: a/b three-layered sandwichesX: jelly-rollH: Double-stranded beta-helixT: Double-stranded beta-helixF: P-loop_SecAECOD (v294.1)
GP-loop_SecAe4e2lG1 A: a/b three-layered sandwichesX: jelly-rollH: Double-stranded beta-helixT: Double-stranded beta-helixF: P-loop_SecAECOD (v294.1)
FP-loop_SecAe4e2lF1 A: a/b three-layered sandwichesX: jelly-rollH: Double-stranded beta-helixT: Double-stranded beta-helixF: P-loop_SecAECOD (v294.1)
EP-loop_SecAe4e2lE1 A: a/b three-layered sandwichesX: jelly-rollH: Double-stranded beta-helixT: Double-stranded beta-helixF: P-loop_SecAECOD (v294.1)
DP-loop_SecAe4e2lD1 A: a/b three-layered sandwichesX: jelly-rollH: Double-stranded beta-helixT: Double-stranded beta-helixF: P-loop_SecAECOD (v294.1)
CP-loop_SecAe4e2lC1 A: a/b three-layered sandwichesX: jelly-rollH: Double-stranded beta-helixT: Double-stranded beta-helixF: P-loop_SecAECOD (v294.1)
BP-loop_SecAe4e2lB1 A: a/b three-layered sandwichesX: jelly-rollH: Double-stranded beta-helixT: Double-stranded beta-helixF: P-loop_SecAECOD (v294.1)
APlexin_RBDe4e2lA1 A: a/b three-layered sandwichesX: cradle loop barrelH: RIFT-relatedT: acid proteaseF: Plexin_RBDECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
I3.30.1890.10 Alpha Beta 2-Layer Sandwich Bacterial polysaccharide co-polymerase-like FepE-likeCATH (4.3.0)
I1.10.287.210 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
H3.30.1890.10 Alpha Beta 2-Layer Sandwich Bacterial polysaccharide co-polymerase-like FepE-likeCATH (4.3.0)
H1.10.287.210 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
G3.30.1890.10 Alpha Beta 2-Layer Sandwich Bacterial polysaccharide co-polymerase-like FepE-likeCATH (4.3.0)
G1.10.287.210 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
F3.30.1890.10 Alpha Beta 2-Layer Sandwich Bacterial polysaccharide co-polymerase-like FepE-likeCATH (4.3.0)
F1.10.287.210 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
E3.30.1890.10 Alpha Beta 2-Layer Sandwich Bacterial polysaccharide co-polymerase-like FepE-likeCATH (4.3.0)
E1.10.287.210 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
D3.30.1890.10 Alpha Beta 2-Layer Sandwich Bacterial polysaccharide co-polymerase-like FepE-likeCATH (4.3.0)
D1.10.287.210 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
C3.30.1890.10 Alpha Beta 2-Layer Sandwich Bacterial polysaccharide co-polymerase-like FepE-likeCATH (4.3.0)
C1.10.287.210 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
B3.30.1890.10 Alpha Beta 2-Layer Sandwich Bacterial polysaccharide co-polymerase-like FepE-likeCATH (4.3.0)
B1.10.287.210 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)
A3.30.1890.10 Alpha Beta 2-Layer Sandwich Bacterial polysaccharide co-polymerase-like FepE-likeCATH (4.3.0)
A1.10.287.210 Mainly Alpha Orthogonal Bundle Helix Hairpins CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D, E
PF02706Chain length determinant protein (Wzz)Chain length determinant protein- Family

InterPro: Protein Family Classification InterPro Database Homepage