4DNX | pdb_00004dnx

The structure of the ATP sulfurylase from Allochromatium vinosum in the open state

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d4dnxb1	All beta proteins	PUA domain-like	PUA domain-like	automated matches	automated matches	(Allochromatium vinosum DSM 180 ) [TaxId: 572477 ],	SCOPe (2.08)
B	d4dnxb2	Alpha and beta proteins (a/b)	Adenine nucleotide alpha hydrolase-like	Nucleotidylyl transferase	ATP sulfurylase catalytic domain	automated matches	(Allochromatium vinosum DSM 180 ) [TaxId: 572477 ],	SCOPe (2.08)
A	d4dnxa1	All beta proteins	PUA domain-like	PUA domain-like	automated matches	automated matches	(Allochromatium vinosum DSM 180 ) [TaxId: 572477 ],	SCOPe (2.08)
A	d4dnxa2	Alpha and beta proteins (a/b)	Adenine nucleotide alpha hydrolase-like	Nucleotidylyl transferase	ATP sulfurylase catalytic domain	automated matches	(Allochromatium vinosum DSM 180 ) [TaxId: 572477 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	Nucleotidylyl transferase	8089789	3001541	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	PUA domain-like	8089788	3001015	SCOP2B (2022-06-29)
A	SCOP2 Family	ATP sulfurylase-like	8089787	4003381	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Nucleotidylyl transferase	8089789	3001541	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PUA domain-like	8089788	3001015	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B		e4dnxB1	A: beta-Grasp	X: Ubiquitin-related	H: Ubiquitin-like	T: FtsJ	F:	ECOD (20:10:01)
B		e4dnxB2	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: tRNA-synt_1d	F:	ECOD (20:10:01)
A		e4dnxA1	A: Alpha-beta plaits	X: Family B DNA polymerase insertion domain	H: Family B DNA polymerase insertion domain	T: RimK	F:	ECOD (20:10:01)
A		e4dnxA2	A: P-loop domains-like	X: P-loop domains-related	H: P-loop containing nucleoside triphosphate hydrolases	T: tRNA-synt_1d	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.10.400.10	Alpha Beta	Roll	Sulfate adenylyltransferase	Sulfate adenylyltransferase	CATH (4.3.0)
B	3.40.50.620	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HUPs	CATH (4.3.0)
A	3.10.400.10	Alpha Beta	Roll	Sulfate adenylyltransferase	Sulfate adenylyltransferase	CATH (4.3.0)
A	3.40.50.620	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	HUPs	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF14306	PUA-like domain (PUA_2)	PUA-like domain	This PUA like domain is found at the N-terminus of ATP-sulfurylase enzymes.	Domain
A, B	PF01747	ATP-sulfurylase (ATP-sulfurylase)	ATP-sulfurylase	This domain is the catalytic domain of ATP-sulfurylase or sulfate adenylyltransferase EC:2.7.7.4 some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase Pfam:PF01583. Both enzymes are required ...	This domain is the catalytic domain of ATP-sulfurylase or sulfate adenylyltransferase EC:2.7.7.4 some of which are part of a bifunctional polypeptide chain associated with adenosyl phosphosulphate (APS) kinase Pfam:PF01583. Both enzymes are required for PAPS (phosphoadenosine-phosphosulfate) synthesis from inorganic sulphate [2]. ATP sulfurylase catalyses the synthesis of adenosine-phosphosulfate APS from ATP and inorganic sulphate [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Sulfate adenylyltransferase	binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding binding adenyl ribonucleotide binding nucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding adenyl nucleotide binding ATP binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding adenylyltransferase activity transferase activity sulfate adenylyltransferase (ATP) activity sulfate adenylyltransferase activity nucleotidyltransferase activity catalytic activity transferase activity, transferring phosphorus-containing groups	sulfur compound biosynthetic process biosynthetic process sulfur compound metabolic process metabolic process cellular process hydrogen sulfide biosynthetic process hydrogen sulfide metabolic process sulfate assimilation	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR015947	PUA-like superfamily	Homologous Superfamily
A, B	IPR025980	ATP-sulfurylase PUA-like domain	Domain
A, B	IPR002650	Sulphate adenylyltransferase	Family
A, B	IPR014729	Rossmann-like alpha/beta/alpha sandwich fold	Homologous Superfamily
A, B	IPR024951	Sulphate adenylyltransferase catalytic domain	Domain
A, B	IPR020792	Sulphate adenylyltransferase, prokaryotic-type	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.