4DHX | pdb_00004dhx

ENY2:GANP complex

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
B	d4dhxb_	All alpha proteins	Sus1-like	Sus1-like	Sus1-like	ENY2	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d4dhxc_	All alpha proteins	Sus1-like	Sus1-like	Sus1-like	ENY2	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d4dhxf_	All alpha proteins	Sus1-like	Sus1-like	Sus1-like	ENY2	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
E	d4dhxe_	All alpha proteins	Sus1-like	Sus1-like	Sus1-like	ENY2	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d4dhxd_	Peptides	Sac3 CID region-like	Sac3 CID region-like	Sac3 CID region-like	Germinal-centre associated nuclear protein (GANP)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d4dhxa_	Peptides	Sac3 CID region-like	Sac3 CID region-like	Sac3 CID region-like	Germinal-centre associated nuclear protein (GANP)	human (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	SUS1/ENY2-like	8052553	3002127	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SUS1/ENY2-like	8052553	3002127	SCOP2B (2022-06-29)
F	SCOP2 Family	SUS1/ENY2-like	8051634	4007442	SCOP2 (2022-06-29)
F	SCOP2 Superfamily	SUS1/ENY2-like	8052553	3002127	SCOP2 (2022-06-29)
E	SCOP2B Superfamily	SUS1/ENY2-like	8052553	3002127	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	GANP CID-like	8092873	3002636	SCOP2B (2022-06-29)
A	SCOP2 Family	GANP CID-like	8046123	4004888	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	GANP CID-like	8092873	3002636	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	EnY2	e4dhxB1	A: alpha duplicates or obligate multimers	X: YheA/YmcA-like	H: Protein SUS1 (From Topology)	T: Protein SUS1	F: EnY2	ECOD (1.6)
C	EnY2	e4dhxC1	A: alpha duplicates or obligate multimers	X: YheA/YmcA-like	H: Protein SUS1 (From Topology)	T: Protein SUS1	F: EnY2	ECOD (1.6)
F	EnY2	e4dhxF1	A: alpha duplicates or obligate multimers	X: YheA/YmcA-like	H: Protein SUS1 (From Topology)	T: Protein SUS1	F: EnY2	ECOD (1.6)
E	EnY2	e4dhxE1	A: alpha duplicates or obligate multimers	X: YheA/YmcA-like	H: Protein SUS1 (From Topology)	T: Protein SUS1	F: EnY2	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	1.10.246.140	Mainly Alpha	Orthogonal Bundle	Serum Albumin	Chain A, Domain 1	CATH (4.2.0)
C	1.10.246.140	Mainly Alpha	Orthogonal Bundle	Serum Albumin	Chain A, Domain 1	CATH (4.2.0)
F	1.10.246.140	Mainly Alpha	Orthogonal Bundle	Serum Albumin	Chain A, Domain 1	CATH (4.2.0)
E	1.10.246.140	Mainly Alpha	Orthogonal Bundle	Serum Albumin	Chain A, Domain 1	CATH (4.2.0)
D	6.10.250.1340	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.2.0)
A	6.10.250.1340	Special	Helix non-globular	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.2.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
B, C, E, F	PF10163	Transcription factor e(y)2 (EnY2)	Transcription factor e(y)2	-	Family
A, D	PF16766	Binding region of GANP to ENY2 (CID_GANP)	Binding region of GANP to ENY2	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
B, C, E, F	Enhancer of yellow 2 transcription factor homolog	chromatin binding binding transcription coactivator activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity	cellular localization nitrogen compound transport nucleocytoplasmic transport transport nuclear transport mRNA transport localization mRNA export from nucleus establishment of localization in cell RNA localization nuclear export nucleobase-containing compound transport RNA transport nucleic acid transport cellular localization nitrogen compound transport nucleocytoplasmic transport transport nuclear transport mRNA transport localization mRNA export from nucleus establishment of localization in cell RNA localization nuclear export nucleobase-containing compound transport RNA transport nucleic acid transport poly(A)+ mRNA export from nucleus intracellular transport gene expression establishment of localization macromolecule biosynthetic process RNA export from nucleus establishment of RNA localization biosynthetic process macromolecule localization cellular process metabolic process macromolecule metabolic process cellular response to stimulus negative regulation of protein transport regulation of localization establishment of protein localization regulation of cellular process response to stimulus negative regulation of biological process negative regulation of transport cell communication negative regulation of secretion carbohydrate homeostasis negative regulation of hormone secretion negative regulation of secretion by cell intracellular protein localization regulation of biological quality regulation of peptide hormone secretion regulation of biological process negative regulation of peptide hormone secretion regulation of hormone levels establishment of protein localization to extracellular region negative regulation of establishment of protein localization intracellular glucose homeostasis protein secretion cellular response to oxygen-containing compound regulation of protein secretion regulation of secretion cellular response to carbohydrate stimulus chemical homeostasis negative regulation of protein secretion regulation of response to stimulus response to glucose response to chemical glucose homeostasis insulin secretion involved in cellular response to glucose stimulus regulation of hormone secretion regulation of protein localization regulation of peptide secretion signaling homeostatic process negative regulation of signaling hormone secretion negative regulation of cell communication protein localization to extracellular region negative regulation of peptide secretion peptide secretion regulation of secretion by cell secretion by cell response to monosaccharide response to carbohydrate amide transport signal release cellular response to hexose stimulus negative regulation of cellular process intracellular chemical homeostasis cellular response to monosaccharide stimulus negative regulation of protein localization regulation of signaling regulation of transport secretion negative regulation of response to stimulus regulation of peptide transport negative regulation of insulin secretion involved in cellular response to glucose stimulus biological regulation regulation of establishment of protein localization export from cell cell-cell signaling response to oxygen-containing compound cellular response to glucose stimulus regulation of protein transport peptide transport response to hexose cellular response to chemical stimulus cellular homeostasis negative regulation of insulin secretion regulation of cellular localization protein transport regulation of insulin secretion peptide hormone secretion regulation of insulin secretion involved in cellular response to glucose stimulus hormone transport regulation of cell communication insulin secretion positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression positive regulation of RNA biosynthetic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription regulation of metabolic process transcription elongation by RNA polymerase II DNA-templated transcription elongation transcription by RNA polymerase II regulation of transcription by RNA polymerase II regulation of cellular response to stress cellular response to stress response to stress regulation of response to stress DNA repair DNA metabolic process regulation of DNA repair DNA damage response regulation of DNA metabolic process RNA processing RNA splicing regulation of RNA splicing cellular component organization chromatin organization cellular component organization or biogenesis	membrane-bounded organelle intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure DUBm complex organelle nucleus nuclear protein-containing complex intracellular membrane-bounded organelle mitochondrion cytoplasm catalytic complex peptidase complex membrane-bounded organelle intracellular organelle protein-containing complex cellular anatomical structure intracellular anatomical structure DUBm complex organelle nucleus nuclear protein-containing complex intracellular membrane-bounded organelle mitochondrion cytoplasm catalytic complex peptidase complex intracellular membraneless organelle chromatin chromosome transferase complex histone acetyltransferase complex acetyltransferase complex membraneless organelle protein acetyltransferase complex SAGA-type complex SAGA complex intracellular protein-containing complex RNA polymerase II transcription regulator complex transcription factor TFTC complex RNA polymerase II, holoenzyme membrane-enclosed lumen transcription regulator complex intracellular organelle lumen nucleoplasm transferase complex, transferring phosphorus-containing groups nuclear DNA-directed RNA polymerase complex organelle lumen RNA polymerase complex DNA-directed RNA polymerase complex nuclear lumen transcription export complex 2 endomembrane system organelle envelope nuclear envelope nuclear pore nuclear basket nuclear pore
A, D	80 kDa MCM3-associated protein	binding nucleic acid binding protein binding histone binding protein-lysine-acetyltransferase activity catalytic activity, acting on a protein protein N-acetyltransferase activity acyltransferase activity N-acetyltransferase activity transferase activity protein N-acyltransferase activity histone acetyltransferase activity acetyltransferase activity histone modifying activity binding nucleic acid binding protein binding histone binding protein-lysine-acetyltransferase activity catalytic activity, acting on a protein protein N-acetyltransferase activity acyltransferase activity N-acetyltransferase activity transferase activity protein N-acyltransferase activity histone acetyltransferase activity acetyltransferase activity histone modifying activity acyltransferase activity, transferring groups other than amino-acyl groups catalytic activity N-acyltransferase activity chromatin binding histone H3 acetyltransferase activity	cellular localization nitrogen compound transport nucleocytoplasmic transport transport nuclear transport mRNA transport localization mRNA export from nucleus establishment of localization in cell RNA localization nuclear export nucleobase-containing compound transport RNA transport nucleic acid transport cellular localization nitrogen compound transport nucleocytoplasmic transport transport nuclear transport mRNA transport localization mRNA export from nucleus establishment of localization in cell RNA localization nuclear export nucleobase-containing compound transport RNA transport nucleic acid transport intracellular transport gene expression establishment of localization macromolecule biosynthetic process RNA export from nucleus establishment of RNA localization biosynthetic process macromolecule localization cellular process metabolic process macromolecule metabolic process establishment of protein localization protein transport intracellular protein localization immune system development developmental process production of molecular mediator of immune response multicellular organismal process immunoglobulin production somatic diversification of immune receptors via somatic mutation somatic diversification of immunoglobulins multicellular organism development immune system process anatomical structure development somatic diversification of immune receptors somatic hypermutation of immunoglobulin genes system development poly(A)+ mRNA export from nucleus cellular component organization protein-DNA complex organization protein-containing complex organization chromatin organization chromatin remodeling cellular component organization or biogenesis nucleosome organization	membrane-bounded organelle intracellular anatomical structure nuclear membrane membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure organelle nuclear envelope organelle membrane cytoplasm membrane-bounded organelle intracellular anatomical structure nuclear membrane membrane nucleus intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle envelope cellular anatomical structure organelle nuclear envelope organelle membrane cytoplasm cytosol membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen protein-containing complex nuclear protein-containing complex nuclear pore nuclear basket nuclear pore membraneless organelle intracellular membraneless organelle chromosome transcription export complex 2

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
B, C, E, F	IPR018783	Transcription factor, enhancer of yellow 2	Family
B, C, E, F	IPR038212	Transcription factor EnY2 superfamily	Homologous Superfamily
A, D	IPR034265	MCM3AP, RNA recognition motif	Domain
A, D	IPR031908	Germinal-centre associated nuclear protein, nucleoporin homology domain	Domain
A, D	IPR031907	Germinal-centre associated nuclear protein, MCM3AP domain	Domain
A, D	IPR045107	SAC3/GANP/THP3	Family
A, D	IPR000717	Proteasome component (PCI) domain	Domain
A, D	IPR031910	Germinal-centre associated nuclear protein, CID domain	Domain
A, D	IPR035979	RNA-binding domain superfamily	Homologous Superfamily
A, D	IPR005062	SAC3/GANP/THP3, conserved domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B, C, E, F	Pharos: Q9NPA8	breast cancer lung cancer ovarian cancer
A, D	Pharos: O60318	testicular germ cell tumor adenoma Charcot-Marie-Tooth disease glioblastoma malignant ependymoma osteosarcoma testicular cancer atypical teratoid rhabdoid tumor colorectal cancer large cell medulloblastoma malignant glioma ovarian cancer breast carcinoma Gaucher disease malignant colon neoplasm testicular germ cell tumor adenoma Charcot-Marie-Tooth disease glioblastoma malignant ependymoma osteosarcoma testicular cancer atypical teratoid rhabdoid tumor colorectal cancer large cell medulloblastoma malignant glioma ovarian cancer breast carcinoma Gaucher disease malignant colon neoplasm medulloblastoma peripheral neuropathy

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.