4DEJ | pdb_00004dej

Crystal structure of glutathione transferase-like protein IL0419 (Target EFI-501089) from Idiomarina loihiensis L2TR

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4deja2	All alpha proteins	GST C-terminal domain-like	GST C-terminal domain-like	automated matches	automated matches	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
A	d4deja1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
A	d4deja3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
B	d4dejb2	All alpha proteins	GST C-terminal domain-like	GST C-terminal domain-like	automated matches	automated matches	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
B	d4dejb1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
B	d4dejb3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
C	d4dejc2	All alpha proteins	GST C-terminal domain-like	GST C-terminal domain-like	automated matches	automated matches	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
C	d4dejc1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
C	d4dejc3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
D	d4dejd2	All alpha proteins	GST C-terminal domain-like	GST C-terminal domain-like	automated matches	automated matches	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
D	d4dejd1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
D	d4dejd3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
F	d4dejf2	All alpha proteins	GST C-terminal domain-like	GST C-terminal domain-like	automated matches	automated matches	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
F	d4dejf1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
J	d4dejj2	All alpha proteins	GST C-terminal domain-like	GST C-terminal domain-like	automated matches	automated matches	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
J	d4dejj1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
J	d4dejj3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
K	d4dejk2	All alpha proteins	GST C-terminal domain-like	GST C-terminal domain-like	automated matches	automated matches	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
K	d4dejk1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
K	d4dejk3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
L	d4dejl2	All alpha proteins	GST C-terminal domain-like	GST C-terminal domain-like	automated matches	automated matches	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
L	d4dejl1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
I	d4deji2	All alpha proteins	GST C-terminal domain-like	GST C-terminal domain-like	automated matches	automated matches	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
I	d4deji1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
I	d4deji3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
H	d4dejh2	All alpha proteins	GST C-terminal domain-like	GST C-terminal domain-like	automated matches	automated matches	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
H	d4dejh1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
H	d4dejh3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
G	d4dejg2	All alpha proteins	GST C-terminal domain-like	GST C-terminal domain-like	automated matches	automated matches	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
G	d4dejg1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
G	d4dejg3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
E	d4deje2	All alpha proteins	GST C-terminal domain-like	GST C-terminal domain-like	automated matches	automated matches	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
E	d4deje1	Alpha and beta proteins (a/b)	Thioredoxin fold	Thioredoxin-like	automated matches	automated matches	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)
E	d4deje3	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Idiomarina loihiensis L2TR ) [TaxId: 283942 ],	SCOPe (2.08)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	I-set	e4dejA1	A: beta barrels	X: cradle loop barrel	H: RIFT-related	T: acid protease	F: I-set	ECOD (v294.2)
B	EF-hand_1, EF-hand_5, EF-hand_7	e4dejB5	A: beta barrels	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: EF-hand_1, EF-hand_5, EF-hand_7	ECOD (v294.2)
C	EF-hand_1, EF-hand_5, EF-hand_7	e4dejC5	A: beta barrels	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: EF-hand_1, EF-hand_5, EF-hand_7	ECOD (v294.2)
D	EF-hand_1, EF-hand_5, EF-hand_7	e4dejD5	A: beta barrels	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: EF-hand_1, EF-hand_5, EF-hand_7	ECOD (v294.2)
F	EF-hand_1, EF-hand_5, EF-hand_7	e4dejF5	A: beta barrels	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: EF-hand_1, EF-hand_5, EF-hand_7	ECOD (v294.2)
J	EF-hand_1, EF-hand_5, EF-hand_7	e4dejJ5	A: beta barrels	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: EF-hand_1, EF-hand_5, EF-hand_7	ECOD (v294.2)
K	EF-hand_1, EF-hand_5, EF-hand_7	e4dejK5	A: beta barrels	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: EF-hand_1, EF-hand_5, EF-hand_7	ECOD (v294.2)
L	EF-hand_1, EF-hand_5, EF-hand_7	e4dejL5	A: beta barrels	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: EF-hand_1, EF-hand_5, EF-hand_7	ECOD (v294.2)
I	EF-hand_1, EF-hand_5, EF-hand_7	e4dejI5	A: beta barrels	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: EF-hand_1, EF-hand_5, EF-hand_7	ECOD (v294.2)
H	EF-hand_1, EF-hand_5, EF-hand_7	e4dejH5	A: beta barrels	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: EF-hand_1, EF-hand_5, EF-hand_7	ECOD (v294.2)
G	EF-hand_1, EF-hand_5, EF-hand_7	e4dejG5	A: beta barrels	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: EF-hand_1, EF-hand_5, EF-hand_7	ECOD (v294.2)
E	EF-hand_1, EF-hand_5, EF-hand_7	e4dejE5	A: beta barrels	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: EF-hand_1, EF-hand_5, EF-hand_7	ECOD (v294.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
A	1.20.1050.10	Mainly Alpha	Up-down Bundle	Glutathione S-transferase Yfyf (Class Pi)	Chain A, domain 2	CATH (4.3.0)
B	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
B	1.20.1050.10	Mainly Alpha	Up-down Bundle	Glutathione S-transferase Yfyf (Class Pi)	Chain A, domain 2	CATH (4.3.0)
C	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
C	1.20.1050.10	Mainly Alpha	Up-down Bundle	Glutathione S-transferase Yfyf (Class Pi)	Chain A, domain 2	CATH (4.3.0)
D	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
D	1.20.1050.10	Mainly Alpha	Up-down Bundle	Glutathione S-transferase Yfyf (Class Pi)	Chain A, domain 2	CATH (4.3.0)
F	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
F	1.20.1050.10	Mainly Alpha	Up-down Bundle	Glutathione S-transferase Yfyf (Class Pi)	Chain A, domain 2	CATH (4.3.0)
J	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
J	1.20.1050.10	Mainly Alpha	Up-down Bundle	Glutathione S-transferase Yfyf (Class Pi)	Chain A, domain 2	CATH (4.3.0)
K	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
K	1.20.1050.10	Mainly Alpha	Up-down Bundle	Glutathione S-transferase Yfyf (Class Pi)	Chain A, domain 2	CATH (4.3.0)
L	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
L	1.20.1050.10	Mainly Alpha	Up-down Bundle	Glutathione S-transferase Yfyf (Class Pi)	Chain A, domain 2	CATH (4.3.0)
I	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
I	1.20.1050.10	Mainly Alpha	Up-down Bundle	Glutathione S-transferase Yfyf (Class Pi)	Chain A, domain 2	CATH (4.3.0)
H	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
H	1.20.1050.10	Mainly Alpha	Up-down Bundle	Glutathione S-transferase Yfyf (Class Pi)	Chain A, domain 2	CATH (4.3.0)
G	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
G	1.20.1050.10	Mainly Alpha	Up-down Bundle	Glutathione S-transferase Yfyf (Class Pi)	Chain A, domain 2	CATH (4.3.0)
E	3.40.30.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaredoxin	Glutaredoxin	CATH (4.3.0)
E	1.20.1050.10	Mainly Alpha	Up-down Bundle	Glutathione S-transferase Yfyf (Class Pi)	Chain A, domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF00043	Glutathione S-transferase, C-terminal domain (GST_C)	Glutathione S-transferase, C-terminal domain	GST conjugates reduced glutathione to a variety of targets including S-crystallin from squid, the eukaryotic elongation factor 1-gamma, the HSP26 family of stress-related proteins and auxin-regulated proteins in plants. Stringent starvation proteins ...	GST conjugates reduced glutathione to a variety of targets including S-crystallin from squid, the eukaryotic elongation factor 1-gamma, the HSP26 family of stress-related proteins and auxin-regulated proteins in plants. Stringent starvation proteins in E. coli are also included in the alignment but are not known to have GST activity. The glutathione molecule binds in a cleft between N and C-terminal domains. The catalytically important residues are proposed to reside in the N-terminal domain [1]. In plants, GSTs are encoded by a large gene family (48 GST genes in Arabidopsis) and can be divided into the phi, tau, theta, zeta, and lambda classes [2].	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	PF02798	Glutathione S-transferase, N-terminal domain (GST_N)	Glutathione S-transferase, N-terminal domain	Function: conjugation of reduced glutathione to a variety of targets. Also included in the alignment, but not GSTs: S-crystallins from squid (similarity to GST previously noted); eukaryotic elongation factors 1-gamma (not known to have GST activity a ...	Function: conjugation of reduced glutathione to a variety of targets. Also included in the alignment, but not GSTs: S-crystallins from squid (similarity to GST previously noted); eukaryotic elongation factors 1-gamma (not known to have GST activity and similarity not previously recognised); HSP26 family of stress-related proteins including auxin-regulated proteins in plants and stringent starvation proteins in E. coli (not known to have GST activity and similarity not previously recognised). The glutathione molecule binds in a cleft between the N- and C-terminal domains - the catalytically important residues are proposed to reside in the N-terminal domain [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	Glutathione S-transferase related protein	transferase activity catalytic activity	-	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR004046	Glutathione S-transferase, C-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR050983	Glutathione S-transferase Omega/HSP26	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR010987	Glutathione S-transferase, C-terminal-like	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036282	Glutathione S-transferase, C-terminal domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR004045	Glutathione S-transferase, N-terminal	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR036249	Thioredoxin-like superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L	IPR034342	Stringent starvation protein A, C-terminal	Domain

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.