4DAS | pdb_00004das

Crystal structure of Bullfrog M ferritin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4dasa_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
B	d4dasb_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
C	d4dasc_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
D	d4dasd_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
E	d4dase_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
F	d4dasf_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
G	d4dasg_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
H	d4dash_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
I	d4dasi_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
J	d4dasj_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
K	d4dask_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
L	d4dasl_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
M	d4dasm_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
N	d4dasn_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
O	d4daso_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
P	d4dasp_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
Q	d4dasq_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
R	d4dasr_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
S	d4dass_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
T	d4dast_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
U	d4dasu_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
V	d4dasv_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
W [auth X]	d4dasx_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)
X [auth W]	d4dasw_	All alpha proteins	Ferritin-like	Ferritin-like	Ferritin	automated matches	bullfrogs (Aquarana catesbeiana ) [TaxId: 8400 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
S	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
T	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
U	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
V	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
W [auth X]	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)
X [auth W]	SCOP2B Superfamily	Ferritin-like	8063914	3001658	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	RRM_1	e4dasA1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
B	RRM_1	e4dasB1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
C	RRM_1	e4dasC1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
D	YbeY	e4dasD1	A: a/b three-layered sandwiches	X: Globin-like	H: Ring-building motif I in type III secretion system	T: Ring-building motif I in type III secretion system	F: YbeY	ECOD (v294.1)
E	RRM_1	e4dasE1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
F	RRM_1	e4dasF1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
G	RRM_1	e4dasG1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
H	RRM_1	e4dasH1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
I	RRM_1	e4dasI1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
J	RRM_1	e4dasJ1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
K	RRM_1	e4dasK1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
L	RRM_1	e4dasL1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
M	RRM_1	e4dasM1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
N	RRM_1	e4dasN1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
O	RRM_1	e4dasO1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
P	RRM_1	e4dasP1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
Q	RRM_1	e4dasQ1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
R	RRM_1	e4dasR1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
S	RRM_1	e4dasS1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
T	RRM_1	e4dasT1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
U	RRM_1	e4dasU1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
V	RRM_1	e4dasV1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
W [auth X]	RRM_1	e4dasX1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)
X [auth W]	RRM_1	e4dasW1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: RRM_1	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
B	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
C	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
D	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
E	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
F	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
G	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
H	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
I	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
J	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
K	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
L	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
M	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
N	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
O	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
P	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
Q	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
R	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
S	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
T	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
U	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
V	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
W [auth X]	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)
X [auth W]	1.20.1260.10	Mainly Alpha	Up-down Bundle	Ferritin	Ferritin, core subunit, four-helix bundle	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W [auth X], X [auth W]	Ferritin, middle subunit	cation binding transition metal ion binding iron ion binding ion binding binding ferrous iron binding metal ion binding small molecule binding ferric iron binding oxidoreductase activity, acting on metal ions oxidoreductase activity ferroxidase activity oxidoreductase activity, acting on metal ions, oxygen as acceptor catalytic activity	intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport intracellular iron ion homeostasis inorganic ion homeostasis cellular homeostasis chemical homeostasis homeostatic process intracellular monoatomic cation homeostasis monoatomic ion homeostasis intracellular chemical homeostasis monoatomic cation homeostasis intracellular monoatomic ion homeostasis localization transport iron ion transport transition metal ion transport monoatomic ion transport monoatomic cation transport establishment of localization metal ion transport	cellular anatomical structure intracellular anatomical structure cytoplasm

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W [auth X], X [auth W]	IPR009040	Ferritin-like diiron domain	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W [auth X], X [auth W]	IPR012347	Ferritin-like	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W [auth X], X [auth W]	IPR009078	Ferritin-like superfamily	Homologous Superfamily
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W [auth X], X [auth W]	IPR008331	Ferritin/DPS domain	Domain
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W [auth X], X [auth W]	IPR001519	Ferritin	Family
A, B, C, D, E, A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W [auth X], X [auth W]	IPR014034	Ferritin, conserved site	Conserved Site