4CHF | pdb_00004chf

Crystal structure of the putative cap-binding domain of the PB2 subunit of Thogoto virus polymerase (form 2)


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BCblDe4chfB1 A: a/b three-layered sandwichesX: DEATH domainH: 40S ribosomal protein S13 N-terminal domainT: 40S ribosomal protein S13 N-terminal domainF: CblDECOD (v294.1)
ACblDe4chfA1 A: a/b three-layered sandwichesX: DEATH domainH: 40S ribosomal protein S13 N-terminal domainT: 40S ribosomal protein S13 N-terminal domainF: CblDECOD (v294.1)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF21490Polymerase basic protein 2, cap-binding domain (PB2_cap-binding)Polymerase basic protein 2, cap-binding domainPolymerase basic protein 2 (PB2) is a subunit of the RNA-dependent RNA polymerase of Orthomyxovirus Influenza A virus (IAV) which performs transcription of viral mRNAs by cap-snatching, a processes that generated capped primers by host pre-mRNA bindi ...Polymerase basic protein 2 (PB2) is a subunit of the RNA-dependent RNA polymerase of Orthomyxovirus Influenza A virus (IAV) which performs transcription of viral mRNAs by cap-snatching, a processes that generated capped primers by host pre-mRNA binding, mediated by PB2 [1]. This protein has two domains, the cap-binding and the so-called '627-domain'. This entry represents the cap-binding domain and includes PB2 from Thogoto (THOV) virus, which is similar to IAV [1].
Domain