4CC4

Complex of InlC of Listeria monocytogenes and human Tuba C-terminal SH3 domain

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations
Protein Modification Annotation

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4cc4a2	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	automated matches	automated matches	(Listeria monocytogenes EGD-e ) [TaxId: 169963 ],	SCOPe (2.08)
A	d4cc4a1	Alpha and beta proteins (a/b)	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	L domain-like	automated matches	automated matches	(Listeria monocytogenes EGD-e ) [TaxId: 169963 ],	SCOPe (2.08)
A	d4cc4a3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Listeria monocytogenes EGD-e ) [TaxId: 169963 ],	SCOPe (2.08)
E	d4cc4e2	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	automated matches	automated matches	(Listeria monocytogenes EGD-e ) [TaxId: 169963 ],	SCOPe (2.08)
E	d4cc4e1	Alpha and beta proteins (a/b)	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	L domain-like	automated matches	automated matches	(Listeria monocytogenes EGD-e ) [TaxId: 169963 ],	SCOPe (2.08)
B	d4cc4b1	All beta proteins	SH3-like barrel	SH3-domain	automated matches	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d4cc4b3	Artifacts	Tags	Tags	Tags	C-terminal Tags	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d4cc4b2	Artifacts	Tags	Tags	Tags	N-terminal Tags	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d4cc4d1	All beta proteins	SH3-like barrel	SH3-domain	automated matches	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
D	d4cc4d2	Artifacts	Tags	Tags	Tags	C-terminal Tags	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d4cc4f1	All beta proteins	SH3-like barrel	SH3-domain	automated matches	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d4cc4f3	Artifacts	Tags	Tags	Tags	C-terminal Tags	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
F	d4cc4f2	Artifacts	Tags	Tags	Tags	N-terminal Tags	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
C	d4cc4c2	All beta proteins	Immunoglobulin-like beta-sandwich	E set domains	automated matches	automated matches	(Listeria monocytogenes EGD-e ) [TaxId: 169963 ],	SCOPe (2.08)
C	d4cc4c1	Alpha and beta proteins (a/b)	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	L domain-like	automated matches	automated matches	(Listeria monocytogenes EGD-e ) [TaxId: 169963 ],	SCOPe (2.08)
C	d4cc4c4	Artifacts	Tags	Tags	Tags	C-terminal Tags	(Listeria monocytogenes EGD-e ) [TaxId: 169963 ],	SCOPe (2.08)
C	d4cc4c3	Artifacts	Tags	Tags	Tags	N-terminal Tags	(Listeria monocytogenes EGD-e ) [TaxId: 169963 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	SH3-domain	8041810	3000153	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	SH3-domain	8041810	3000153	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	SH3-domain	8041810	3000153	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF08191	e4cc4A1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF08191	ECOD (1.6)
A	PF12799	e4cc4A2	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Leucine-rich repeats (From Topology)	T: Leucine-rich repeats	F: PF12799	ECOD (1.6)
A	PF12354	e4cc4A3	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: PF12354	ECOD (1.6)
E	PF08191	e4cc4E1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF08191	ECOD (1.6)
E	PF12799	e4cc4E2	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Leucine-rich repeats (From Topology)	T: Leucine-rich repeats	F: PF12799	ECOD (1.6)
E	PF12354	e4cc4E3	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: PF12354	ECOD (1.6)
B	PF07653	e4cc4B1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF07653	ECOD (1.6)
D	PF07653	e4cc4D1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF07653	ECOD (1.6)
F	PF07653	e4cc4F1	A: beta barrels	X: SH3	H: SH3	T: SH3	F: PF07653	ECOD (1.6)
C	PF08191	e4cc4C1	A: beta sandwiches	X: Immunoglobulin-like beta-sandwich	H: Immunoglobulin-related	T: Immunoglobulin/Fibronectin type III/E set domains/PapD-like	F: PF08191	ECOD (1.6)
C	PF12799	e4cc4C2	A: beta duplicates or obligate multimers	X: Single-stranded right-handed beta-helix	H: Leucine-rich repeats (From Topology)	T: Leucine-rich repeats	F: PF12799	ECOD (1.6)
C	PF12354	e4cc4C3	A: alpha arrays	X: EF-hand	H: EF-hand-related	T: EF-hand	F: PF12354	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
A	2.60.40.1220	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
E	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
E	2.60.40.1220	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)
B	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
D	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
F	2.30.30.40	Mainly Beta	Roll	SH3 type barrels.	SH3 Domains	CATH (4.3.0)
C	3.80.10.10	Alpha Beta	Alpha-Beta Horseshoe	Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)	Ribonuclease Inhibitor	CATH (4.3.0)
C	2.60.40.1220	Mainly Beta	Sandwich	Immunoglobulin-like		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, E	PF12354	Bacterial adhesion/invasion protein N terminal (Internalin_N)	Bacterial adhesion/invasion protein N terminal	This domain family is found in bacteria, and is approximately 60 amino acids in length. The family is found in association with Pfam:PF00560, Pfam:PF08191, Pfam:PF09479. There are two completely conserved residues (I and F) that may be functionally i ...	This domain family is found in bacteria, and is approximately 60 amino acids in length. The family is found in association with Pfam:PF00560, Pfam:PF08191, Pfam:PF09479. There are two completely conserved residues (I and F) that may be functionally important. Internalin mediates bacterial adhesion and invasion of epithelial cells in the human intestine through specific interaction with its host cell receptor E-cadherin. This family is the N terminal of internalin, the cap domain of the protein. The cap domain is conserved between different internalin types. The cap domain does not interact with E cadherin, therefore its function is presumably structural: capping the hydrophobic core.	Domain
A, E	PF12799	Leucine Rich repeats (2 copies) (LRR_4)	Leucine Rich repeats (2 copies)	-	Repeat
A, E	PF08191	LRR adjacent (LRR_adjacent)	LRR adjacent	-	Family
B, D, F	PF07653	Variant SH3 domain (SH3_2)	Variant SH3 domain	SH3 (Src homology 3) domains are often indicative of a protein involved in signal transduction related to cytoskeletal organisation. First described in the Src cytoplasmic tyrosine kinase Swiss:P12931. The structure is a partly opened beta barrel.	Domain
C	PF12354	Bacterial adhesion/invasion protein N terminal (Internalin_N)	Bacterial adhesion/invasion protein N terminal	This domain family is found in bacteria, and is approximately 60 amino acids in length. The family is found in association with Pfam:PF00560, Pfam:PF08191, Pfam:PF09479. There are two completely conserved residues (I and F) that may be functionally i ...	This domain family is found in bacteria, and is approximately 60 amino acids in length. The family is found in association with Pfam:PF00560, Pfam:PF08191, Pfam:PF09479. There are two completely conserved residues (I and F) that may be functionally important. Internalin mediates bacterial adhesion and invasion of epithelial cells in the human intestine through specific interaction with its host cell receptor E-cadherin. This family is the N terminal of internalin, the cap domain of the protein. The cap domain is conserved between different internalin types. The cap domain does not interact with E cadherin, therefore its function is presumably structural: capping the hydrophobic core.	Domain
C	PF12799	Leucine Rich repeats (2 copies) (LRR_4)	Leucine Rich repeats (2 copies)	-	Repeat
C	PF08191	LRR adjacent (LRR_adjacent)	LRR adjacent	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, E	INLC PROTEIN	-	-	extracellular region cellular anatomical entity host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region
B, D, F	DYNAMIN-BINDING PROTEIN	GTPase regulator activity enzyme regulator activity guanyl-nucleotide exchange factor activity nucleoside-triphosphatase regulator activity molecular function regulator activity	developmental process regulation of biological process regulation of developmental process biological regulation regulation of cell shape cell morphogenesis regulation of cell morphogenesis anatomical structure morphogenesis anatomical structure development regulation of biological quality regulation of anatomical structure morphogenesis cellular response to stimulus regulation of signaling regulation of cellular process developmental process regulation of biological process regulation of developmental process biological regulation regulation of cell shape cell morphogenesis regulation of cell morphogenesis anatomical structure morphogenesis anatomical structure development regulation of biological quality regulation of anatomical structure morphogenesis cellular response to stimulus regulation of signaling regulation of cellular process small GTPase-mediated signal transduction response to stimulus signaling regulation of small GTPase mediated signal transduction regulation of signal transduction intracellular signal transduction cell communication regulation of intracellular signal transduction regulation of response to stimulus intracellular signaling cassette regulation of cell communication cellular process signal transduction organelle assembly plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cellular component biogenesis cellular component organization organelle organization cellular component assembly cilium assembly cellular component organization or biogenesis cilium organization cell projection assembly	membrane-bounded organelle intracellular anatomical structure Golgi apparatus subcompartment Golgi apparatus organelle subcompartment cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle Golgi stack cytoplasm cell-cell junction anchoring junction membrane-bounded organelle intracellular anatomical structure Golgi apparatus subcompartment Golgi apparatus organelle subcompartment cellular anatomical entity intracellular membrane-bounded organelle endomembrane system intracellular organelle organelle Golgi stack cytoplasm cell-cell junction anchoring junction cell junction cytoskeleton intracellular non-membrane-bounded organelle non-membrane-bounded organelle synapse cytosol presynapse
C	INLC PROTEIN	-	-	extracellular region cellular anatomical entity host cellular component host intracellular part host cell cytoplasm host cell part host intracellular region

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, E	IPR025875	Leucine rich repeat 4	Repeat
A, E	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
A, E	IPR014756	Immunoglobulin E-set	Homologous Superfamily
A, E	IPR001611	Leucine-rich repeat	Repeat
A, E	IPR014755	Copper resistance protein CopC/internalin, immunoglobulin-like	Homologous Superfamily
A, E	IPR012569	Internalin, Ig-like inter-repeat region	Domain
A, E	IPR024634	Internalin, N-terminal	Domain
A, E	IPR003591	Leucine-rich repeat, typical subtype	Repeat
B, D, F	IPR004148	BAR domain	Domain
B, D, F	IPR035818	Dynamin-binding protein, second N-terminal SH3 domain	Domain
B, D, F	IPR035820	Dynamin-binding protein, first C-terminal SH3 domain	Domain
B, D, F	IPR000219	Dbl homology (DH) domain	Domain
B, D, F	IPR035819	Dynamin-binding protein, third N-terminal SH3 domain	Domain
B, D, F	IPR001452	SH3 domain	Domain
B, D, F	IPR036028	SH3-like domain superfamily	Homologous Superfamily
B, D, F	IPR035899	Dbl homology (DH) domain superfamily	Homologous Superfamily
B, D, F	IPR027267	AH/BAR domain superfamily	Homologous Superfamily
B, D, F	IPR035817	Dynamin-binding protein, first N-terminal SH3 domain	Domain
B, D, F	IPR001331	Guanine-nucleotide dissociation stimulator, CDC24, conserved site	Conserved Site
C	IPR025875	Leucine rich repeat 4	Repeat
C	IPR032675	Leucine-rich repeat domain superfamily	Homologous Superfamily
C	IPR014756	Immunoglobulin E-set	Homologous Superfamily
C	IPR001611	Leucine-rich repeat	Repeat
C	IPR014755	Copper resistance protein CopC/internalin, immunoglobulin-like	Homologous Superfamily
C	IPR012569	Internalin, Ig-like inter-repeat region	Domain
C	IPR024634	Internalin, N-terminal	Domain
C	IPR003591	Leucine-rich repeat, typical subtype	Repeat

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B, D, F	Pharos: Q6XZF7	atypical teratoid rhabdoid tumor glioblastoma malignant mesothelioma psoriasis B-cell chronic lymphocytic leukemia interstitial cystitis non-alcoholic fatty liver disease tuberculosis cataract lung cancer osteosarcoma

Protein Modification Annotation

Modified Residue(s)
Chain	Residue(s)	Description
A, E	CSX	Parent Component: CYS RESID: AA0451 PSI-MOD : 2'-(S-L-cysteinyl)-6'-hydroxy-L-tryptophan sulfoxide MOD:01380
C	CSX	Parent Component: CYS RESID: AA0451 , AA0451 PSI-MOD : 2'-(S-L-cysteinyl)-6'-hydroxy-L-tryptophan sulfoxide MOD:01380 , 2'-(S-L-cysteinyl)-6'-hydroxy-L-tryptophan sulfoxide MOD:01380