4BXR | pdb_00004bxr

Structure of the wild-type TCP10 domain of Danio rerio CPAP in complex with a peptide of Danio rerio STIL

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2B Superfamily	TCP domain-like	8091559	3002519	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	TCP domain-like	8091559	3002519	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Tcp10_C	e4bxrB1	A: a/b three-layered sandwiches	X: Anticodon-binding domain of Class II aaRS	H: Anticodon-binding domain of Class II aaRS	T: Anticodon-binding domain of Class II aaRS	F: Tcp10_C	ECOD (v294.1)
A	CBM_48	e4bxrA1	A: a/b three-layered sandwiches	X: HAMP domain	H: HAMP domain	T: HAMP domain	F: CBM_48	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	2.60.450.20	Mainly Beta	Sandwich	lipopolysaccharide transport protein A fold		CATH (4.3.0)
A	2.60.450.20	Mainly Beta	Sandwich	lipopolysaccharide transport protein A fold		CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF07202	T-complex protein 10 C-terminus (Tcp10_C)	T-complex protein 10 C-terminus	-	Repeat

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
C, D	SCL-INTERRUPTING LOCUS PROTEIN HOMOLOG	-	cellular component organization organelle organization microtubule organizing center organization microtubule cytoskeleton organization cellular process microtubule-based process cellular component organization or biogenesis cytoskeleton organization cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling cellular component organization organelle organization microtubule organizing center organization microtubule cytoskeleton organization cellular process microtubule-based process cellular component organization or biogenesis cytoskeleton organization cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling biological regulation smoothened signaling pathway cell communication signal transduction regulation of cellular component organization membraneless organelle assembly cellular component biogenesis centrosome duplication cellular component assembly centrosome cycle cell cycle regulation of cell cycle regulation of centriole replication cell cycle process centriole replication centriole assembly organelle assembly regulation of centrosome cycle regulation of cell cycle process regulation of microtubule-based process regulation of cellular component biogenesis regulation of organelle organization regulation of centrosome duplication regulation of organelle assembly protein localization to microtubule cytoskeleton localization protein localization to cytoskeleton protein localization to organelle macromolecule localization protein localization to microtubule organizing center intracellular protein localization protein localization to centrosome positive regulation of organelle organization regulation of cytoskeleton organization positive regulation of cellular component organization positive regulation of biological process positive regulation of spindle assembly positive regulation of cell cycle process chromosome segregation positive regulation of cellular process spindle organization positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization regulation of spindle organization spindle assembly positive regulation of cell cycle regulation of spindle assembly regulation of microtubule cytoskeleton organization positive regulation of organelle assembly mitotic cell cycle mitotic spindle organization mitotic cell cycle process microtubule cytoskeleton organization involved in mitosis positive regulation of centriole replication developmental process anatomical structure morphogenesis anatomical structure development body morphogenesis positive regulation of mitotic spindle organization regulation of mitotic spindle organization regulation of mitotic cell cycle positive regulation of mitotic cell cycle regulation of cell cycle phase transition cell cycle phase transition regulation of cell cycle G1/S phase transition cell cycle G1/S phase transition positive regulation of mitotic cell cycle phase transition positive regulation of G1/S transition of mitotic cell cycle regulation of mitotic cell cycle phase transition positive regulation of cell cycle G1/S phase transition regulation of G1/S transition of mitotic cell cycle positive regulation of cell cycle phase transition G1/S transition of mitotic cell cycle mitotic cell cycle phase transition cellular homeostasis neuron cellular homeostasis homeostatic process	cell periphery cell cortex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle microtubule organizing center cytoskeleton organelle membraneless organelle centriole intracellular membraneless organelle microtubule cytoskeleton cytosol cell periphery cell cortex cellular anatomical structure intracellular anatomical structure cytoplasm intracellular organelle microtubule organizing center cytoskeleton organelle membraneless organelle centriole intracellular membraneless organelle microtubule cytoskeleton cytosol protein-containing complex procentriole replication complex
A, B	CPAP	protein binding binding protein domain specific binding cytoskeletal protein binding tubulin binding	centriole assembly microtubule organizing center organization centriole elongation organelle assembly microtubule cytoskeleton organization membraneless organelle assembly cellular component organization cellular component biogenesis centrosome duplication organelle organization cellular component assembly centrosome cycle cellular process microtubule-based process centriole assembly microtubule organizing center organization centriole elongation organelle assembly microtubule cytoskeleton organization membraneless organelle assembly cellular component organization cellular component biogenesis centrosome duplication organelle organization cellular component assembly centrosome cycle cellular process microtubule-based process cell cycle cellular component organization or biogenesis cytoskeleton organization centriole replication cell cycle process positive regulation of organelle organization regulation of cytoskeleton organization regulation of cellular component organization regulation of cellular process positive regulation of cellular component organization positive regulation of biological process positive regulation of spindle assembly positive regulation of cell cycle process regulation of cell cycle chromosome segregation positive regulation of cellular process spindle organization regulation of biological process regulation of cell cycle process positive regulation of cellular component biogenesis positive regulation of cytoskeleton organization biological regulation regulation of microtubule-based process regulation of spindle organization regulation of cellular component biogenesis spindle assembly regulation of organelle organization positive regulation of cell cycle regulation of spindle assembly regulation of organelle assembly regulation of microtubule cytoskeleton organization positive regulation of organelle assembly regulation of centriole replication regulation of centrosome cycle regulation of centrosome duplication positive regulation of centriole replication positive regulation of mitotic spindle organization regulation of mitotic spindle organization mitotic cell cycle regulation of mitotic cell cycle positive regulation of mitotic cell cycle microtubule cytoskeleton organization involved in mitosis mitotic spindle organization mitotic cell cycle process regulation of cell cycle phase transition cell cycle phase transition regulation of cell cycle G1/S phase transition cell cycle G1/S phase transition positive regulation of mitotic cell cycle phase transition positive regulation of G1/S transition of mitotic cell cycle regulation of mitotic cell cycle phase transition positive regulation of cell cycle G1/S phase transition regulation of G1/S transition of mitotic cell cycle positive regulation of cell cycle phase transition G1/S transition of mitotic cell cycle mitotic cell cycle phase transition plasma membrane bounded cell projection organization cell projection organization plasma membrane bounded cell projection assembly cilium assembly cilium organization cell projection assembly	intracellular organelle centrosome microtubule organizing center cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton centriole protein-containing complex procentriole replication complex cytoplasm intracellular organelle centrosome microtubule organizing center cellular anatomical structure intracellular anatomical structure cytoskeleton organelle membraneless organelle intracellular membraneless organelle microtubule cytoskeleton centriole protein-containing complex procentriole replication complex cytoplasm polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
C, D	IPR026123	STIL	Family
C, D	IPR057731	STIL, N-terminal domain	Domain
C, D	IPR057655	STIL, coiled coil region	Domain
C, D	IPR058559	STIL, proline-rich motif	Conserved Site
A, B	IPR009852	Centromere protein J, C-terminal domain	Domain
A, B	IPR058029	CENPJ, tubulin-binding region	Domain
A, B	IPR047002	T-complex protein 10, C-terminal domain superfamily	Homologous Superfamily
A, B	IPR026581	TCP10L/CENPJ	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.