4BUM | pdb_00004bum

Crystal structure of the Voltage Dependant Anion Channel 2 from zebrafish.

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: OPM
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD
Membrane Protein Annotation: mpstruc

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A [auth X]	Arylsulfotran_N	e4bumX1	A: a/b three-layered sandwiches	X: TIM beta/alpha-barrel	H: gamma-Crystallin-like	T: gamma-Crystallin-like	F: Arylsulfotran_N	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A [auth X]	2.40.160.10	Mainly Beta	Beta Barrel	Porin	Porin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A [auth X]	PF01459	Eukaryotic porin (Porin_3)	Eukaryotic porin	-	Family

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A [auth X]	VOLTAGE-DEPENDENT ANION CHANNEL 2	wide pore channel activity passive transmembrane transporter activity channel activity porin activity transporter activity transmembrane transporter activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding identical protein binding protein binding monoatomic anion transmembrane transporter activity wide pore channel activity passive transmembrane transporter activity channel activity porin activity transporter activity transmembrane transporter activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding identical protein binding protein binding monoatomic anion transmembrane transporter activity gated channel activity monoatomic ion channel activity voltage-gated channel activity voltage-gated monoatomic ion channel activity voltage-gated monoatomic anion channel activity monoatomic anion channel activity monoatomic ion transmembrane transporter activity	heart process multicellular organismal process system process regulation of biological process regulation of heart contraction regulation of system process biological regulation circulatory system process regulation of blood circulation regulation of multicellular organismal process heart contraction blood circulation transport monoatomic ion transmembrane transport heart process multicellular organismal process system process regulation of biological process regulation of heart contraction regulation of system process biological regulation circulatory system process regulation of blood circulation regulation of multicellular organismal process heart contraction blood circulation transport monoatomic ion transmembrane transport establishment of localization calcium ion transport metal ion transport monoatomic cation transmembrane transport transmembrane transport localization intercellular transport mitochondrial calcium ion transmembrane transport monoatomic ion transport cellular process calcium import into the mitochondrion monoatomic cation transport calcium ion transmembrane transport fin regeneration developmental process tissue regeneration developmental growth anatomical structure development growth regeneration	membrane-bounded organelle intracellular anatomical structure mitochondrial membrane mitochondrion membrane organelle outer membrane intracellular membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle organelle mitochondrial envelope mitochondrial outer membrane membrane-bounded organelle intracellular anatomical structure mitochondrial membrane mitochondrion membrane organelle outer membrane intracellular membrane-bounded organelle intracellular organelle organelle envelope cellular anatomical structure bounding membrane of organelle organelle mitochondrial envelope mitochondrial outer membrane outer membrane cytoplasm organelle membrane cell periphery plasma membrane protein-containing complex pore complex membrane protein complex

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A [auth X]	IPR023614	Porin domain superfamily	Homologous Superfamily
A [auth X]	IPR001925	Porin, eukaryotic type	Family
A [auth X]	IPR027246	Eukaryotic porin/Tom40	Family

Membrane Protein Annotation: OPM OPM Database Homepage

Chains	External Link	Type	Class	Superfamily	Family
A [auth X]	OPM	Transmembrane	Beta-barrel transmembrane	Mitochondrial and plastid porins	Voltage-dependent anion channel (VDAC) porin (n=19,S=20)

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A [auth X]	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A [auth X]	MemProtMD	Annotated as membrane protein by MemProtMD

Membrane Protein Annotation: mpstruc mpstruc Database Homepage

Chains	Resource Link	Group	Subgroup	Protein
A [auth X]	mpstruc	TRANSMEMBRANE PROTEINS: BETA-BARREL	Mitochondrial Outer Membrane Beta Barrel Proteins	VDAC-2 voltage dependent anion channel

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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