4BOT | pdb_00004bot

The structure and super-organization of acetylcholine receptor- rapsyn complexes class E

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Membrane Protein Annotation: PDBTM
Membrane Protein Annotation: MemProtMD

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
E	DUF3228	e4botE3	A: a/b three-layered sandwiches	X: POZ domain	H: POZ domain	T: POZ domain	F: DUF3228	ECOD (v294.1)
C	Cupin_2	e4botC5	A: a/b three-layered sandwiches	X: DEATH domain	H: 40S ribosomal protein S13 N-terminal domain	T: 40S ribosomal protein S13 N-terminal domain	F: Cupin_2	ECOD (v294.1)
B	DUF3228	e4botB3	A: a/b three-layered sandwiches	X: POZ domain	H: POZ domain	T: POZ domain	F: DUF3228	ECOD (v294.1)
D	CblD	e4botD1	A: a/b three-layered sandwiches	X: DEATH domain	H: 40S ribosomal protein S13 N-terminal domain	T: 40S ribosomal protein S13 N-terminal domain	F: CblD	ECOD (v294.1)
A	CblD	e4botA1	A: a/b three-layered sandwiches	X: DEATH domain	H: 40S ribosomal protein S13 N-terminal domain	T: 40S ribosomal protein S13 N-terminal domain	F: CblD	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
E	ACETYLCHOLINE RECEPTOR GAMMA SUBUNIT	transmitter-gated monoatomic ion channel activity monoatomic cation transmembrane transporter activity molecular transducer activity gated channel activity monoatomic ion channel activity signaling receptor activity transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential excitatory extracellular ligand-gated monoatomic ion channel activity neurotransmitter receptor activity ligand-gated channel activity ligand-gated monoatomic ion channel activity extracellular ligand-gated monoatomic ion channel activity postsynaptic neurotransmitter receptor activity monoatomic cation channel activity passive transmembrane transporter activity transmitter-gated monoatomic ion channel activity monoatomic cation transmembrane transporter activity molecular transducer activity gated channel activity monoatomic ion channel activity signaling receptor activity transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential excitatory extracellular ligand-gated monoatomic ion channel activity neurotransmitter receptor activity ligand-gated channel activity ligand-gated monoatomic ion channel activity extracellular ligand-gated monoatomic ion channel activity postsynaptic neurotransmitter receptor activity monoatomic cation channel activity passive transmembrane transporter activity acetylcholine-gated monoatomic cation-selective channel activity channel activity monoatomic ion transmembrane transporter activity transmitter-gated channel activity transporter activity ligand-gated monoatomic cation channel activity transmembrane transporter activity transmembrane signaling receptor activity	cellular response to nitrogen compound cellular response to stimulus cellular response to acetylcholine regulation of biological process regulation of cellular process response to stimulus signaling biological regulation response to oxygen-containing compound cell-cell signaling response to nitrogen compound acetylcholine receptor signaling pathway postsynaptic signal transduction cellular response to oxygen-containing compound cell communication cellular response to nitrogen compound cellular response to stimulus cellular response to acetylcholine regulation of biological process regulation of cellular process response to stimulus signaling biological regulation response to oxygen-containing compound cell-cell signaling response to nitrogen compound acetylcholine receptor signaling pathway postsynaptic signal transduction cellular response to oxygen-containing compound cell communication cellular response to chemical stimulus synaptic signaling response to chemical response to acetylcholine cellular process signal transduction	cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane protein-containing complex plasma membrane protein complex membrane protein complex transporter complex cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane protein-containing complex plasma membrane protein complex membrane protein complex transporter complex receptor complex acetylcholine-gated channel complex transmembrane transporter complex plasma membrane signaling receptor complex monoatomic ion channel complex
C	ACETYLCHOLINE RECEPTOR DELTA SUBUNIT	transmitter-gated monoatomic ion channel activity monoatomic cation transmembrane transporter activity molecular transducer activity gated channel activity monoatomic ion channel activity signaling receptor activity transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential excitatory extracellular ligand-gated monoatomic ion channel activity neurotransmitter receptor activity ligand-gated channel activity ligand-gated monoatomic ion channel activity extracellular ligand-gated monoatomic ion channel activity postsynaptic neurotransmitter receptor activity monoatomic cation channel activity passive transmembrane transporter activity transmitter-gated monoatomic ion channel activity monoatomic cation transmembrane transporter activity molecular transducer activity gated channel activity monoatomic ion channel activity signaling receptor activity transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential excitatory extracellular ligand-gated monoatomic ion channel activity neurotransmitter receptor activity ligand-gated channel activity ligand-gated monoatomic ion channel activity extracellular ligand-gated monoatomic ion channel activity postsynaptic neurotransmitter receptor activity monoatomic cation channel activity passive transmembrane transporter activity acetylcholine-gated monoatomic cation-selective channel activity channel activity monoatomic ion transmembrane transporter activity transmitter-gated channel activity transporter activity ligand-gated monoatomic cation channel activity transmembrane transporter activity transmembrane signaling receptor activity	cellular response to nitrogen compound cellular response to stimulus cellular response to acetylcholine regulation of biological process regulation of cellular process response to stimulus signaling biological regulation response to oxygen-containing compound cell-cell signaling response to nitrogen compound acetylcholine receptor signaling pathway postsynaptic signal transduction cellular response to oxygen-containing compound cell communication cellular response to nitrogen compound cellular response to stimulus cellular response to acetylcholine regulation of biological process regulation of cellular process response to stimulus signaling biological regulation response to oxygen-containing compound cell-cell signaling response to nitrogen compound acetylcholine receptor signaling pathway postsynaptic signal transduction cellular response to oxygen-containing compound cell communication cellular response to chemical stimulus synaptic signaling response to chemical response to acetylcholine cellular process signal transduction	cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane protein-containing complex plasma membrane protein complex membrane protein complex transporter complex cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane protein-containing complex plasma membrane protein complex membrane protein complex transporter complex receptor complex acetylcholine-gated channel complex transmembrane transporter complex plasma membrane signaling receptor complex monoatomic ion channel complex
B	ACETYLCHOLINE RECEPTOR BETA SUBUNIT	transmitter-gated monoatomic ion channel activity monoatomic cation transmembrane transporter activity molecular transducer activity gated channel activity monoatomic ion channel activity signaling receptor activity transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential excitatory extracellular ligand-gated monoatomic ion channel activity neurotransmitter receptor activity ligand-gated channel activity ligand-gated monoatomic ion channel activity extracellular ligand-gated monoatomic ion channel activity postsynaptic neurotransmitter receptor activity monoatomic cation channel activity passive transmembrane transporter activity transmitter-gated monoatomic ion channel activity monoatomic cation transmembrane transporter activity molecular transducer activity gated channel activity monoatomic ion channel activity signaling receptor activity transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential excitatory extracellular ligand-gated monoatomic ion channel activity neurotransmitter receptor activity ligand-gated channel activity ligand-gated monoatomic ion channel activity extracellular ligand-gated monoatomic ion channel activity postsynaptic neurotransmitter receptor activity monoatomic cation channel activity passive transmembrane transporter activity acetylcholine-gated monoatomic cation-selective channel activity channel activity monoatomic ion transmembrane transporter activity transmitter-gated channel activity transporter activity ligand-gated monoatomic cation channel activity transmembrane transporter activity transmembrane signaling receptor activity	cellular response to nitrogen compound cellular response to stimulus cellular response to acetylcholine regulation of biological process regulation of cellular process response to stimulus signaling biological regulation response to oxygen-containing compound cell-cell signaling response to nitrogen compound acetylcholine receptor signaling pathway postsynaptic signal transduction cellular response to oxygen-containing compound cell communication cellular response to nitrogen compound cellular response to stimulus cellular response to acetylcholine regulation of biological process regulation of cellular process response to stimulus signaling biological regulation response to oxygen-containing compound cell-cell signaling response to nitrogen compound acetylcholine receptor signaling pathway postsynaptic signal transduction cellular response to oxygen-containing compound cell communication cellular response to chemical stimulus synaptic signaling response to chemical response to acetylcholine cellular process signal transduction	cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane protein-containing complex plasma membrane protein complex membrane protein complex transporter complex cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane protein-containing complex plasma membrane protein complex membrane protein complex transporter complex receptor complex acetylcholine-gated channel complex transmembrane transporter complex plasma membrane signaling receptor complex monoatomic ion channel complex
A, D	ACETYLCHOLINE RECEPTOR SUBUNIT ALPHA	transmitter-gated monoatomic ion channel activity monoatomic cation transmembrane transporter activity molecular transducer activity gated channel activity monoatomic ion channel activity signaling receptor activity transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential excitatory extracellular ligand-gated monoatomic ion channel activity neurotransmitter receptor activity ligand-gated channel activity ligand-gated monoatomic ion channel activity extracellular ligand-gated monoatomic ion channel activity postsynaptic neurotransmitter receptor activity monoatomic cation channel activity passive transmembrane transporter activity transmitter-gated monoatomic ion channel activity monoatomic cation transmembrane transporter activity molecular transducer activity gated channel activity monoatomic ion channel activity signaling receptor activity transmitter-gated monoatomic ion channel activity involved in regulation of postsynaptic membrane potential excitatory extracellular ligand-gated monoatomic ion channel activity neurotransmitter receptor activity ligand-gated channel activity ligand-gated monoatomic ion channel activity extracellular ligand-gated monoatomic ion channel activity postsynaptic neurotransmitter receptor activity monoatomic cation channel activity passive transmembrane transporter activity acetylcholine-gated monoatomic cation-selective channel activity channel activity monoatomic ion transmembrane transporter activity transmitter-gated channel activity transporter activity ligand-gated monoatomic cation channel activity transmembrane transporter activity transmembrane signaling receptor activity	-	cell periphery postsynapse cellular anatomical structure postsynaptic membrane synapse cell junction membrane plasma membrane plasma membrane region synaptic membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
E	IPR018000	Neurotransmitter-gated ion-channel, conserved site	Conserved Site
E	IPR038050	Neuronal acetylcholine receptor	Homologous Superfamily
E	IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	Domain
E	IPR036719	Neurotransmitter-gated ion-channel transmembrane domain superfamily	Homologous Superfamily
E	IPR002394	Nicotinic acetylcholine receptor	Family
E	IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	Domain
E	IPR036734	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Homologous Superfamily
E	IPR006201	Neurotransmitter-gated ion-channel	Family
C	IPR018000	Neurotransmitter-gated ion-channel, conserved site	Conserved Site
C	IPR038050	Neuronal acetylcholine receptor	Homologous Superfamily
C	IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	Domain
C	IPR036719	Neurotransmitter-gated ion-channel transmembrane domain superfamily	Homologous Superfamily
C	IPR002394	Nicotinic acetylcholine receptor	Family
C	IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	Domain
C	IPR036734	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Homologous Superfamily
C	IPR006201	Neurotransmitter-gated ion-channel	Family
B	IPR018000	Neurotransmitter-gated ion-channel, conserved site	Conserved Site
B	IPR038050	Neuronal acetylcholine receptor	Homologous Superfamily
B	IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	Domain
B	IPR036719	Neurotransmitter-gated ion-channel transmembrane domain superfamily	Homologous Superfamily
B	IPR002394	Nicotinic acetylcholine receptor	Family
B	IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	Domain
B	IPR036734	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Homologous Superfamily
B	IPR006201	Neurotransmitter-gated ion-channel	Family
A, D	IPR002394	Nicotinic acetylcholine receptor	Family
A, D	IPR006029	Neurotransmitter-gated ion-channel transmembrane domain	Domain
A, D	IPR018000	Neurotransmitter-gated ion-channel, conserved site	Conserved Site
A, D	IPR038050	Neuronal acetylcholine receptor	Homologous Superfamily
A, D	IPR006202	Neurotransmitter-gated ion-channel ligand-binding domain	Domain
A, D	IPR036719	Neurotransmitter-gated ion-channel transmembrane domain superfamily	Homologous Superfamily
A, D	IPR036734	Neurotransmitter-gated ion-channel ligand-binding domain superfamily	Homologous Superfamily
A, D	IPR006201	Neurotransmitter-gated ion-channel	Family

Membrane Protein Annotation: PDBTM PDBTM Database Homepage

Chains	External Link	Comment
A, B, C, D, E	PDBTM	Annotated as membrane protein by PDBTM

Membrane Protein Annotation: MemProtMD MemProtMD Database Homepage

Chains	External Link	Comment
A, B, C, D, E	MemProtMD	Annotated as membrane protein by MemProtMD

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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