4BMV | pdb_00004bmv

Short-chain dehydrogenase from Sphingobium yanoikuyae in complex with NADPH

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J	SCOP2B Superfamily	SDR-like	8087334	3000038	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	SDR-like	8087334	3000038	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	SDR-like	8087334	3000038	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	SDR-like	8087334	3000038	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	SDR-like	8087334	3000038	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	SDR-like	8087334	3000038	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	SDR-like	8087334	3000038	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	SDR-like	8087334	3000038	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	SDR-like	8087334	3000038	SCOP2B (2022-06-29)
A	SCOP2 Family	Short-chain dehydrogenases/reductases, SDR	8087333	4000029	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	SDR-like	8087334	3000038	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
J	CBM_5_12	e4bmvJ1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: CBM_5_12	ECOD (v294.1)
I	PCI	e4bmvI1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: PCI	ECOD (v294.1)
H	tRNA-synt_1b	e4bmvH1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: tRNA-synt_1b	ECOD (v294.1)
G	tRNA-synt_1b	e4bmvG1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: tRNA-synt_1b	ECOD (v294.1)
F	tRNA-synt_1b	e4bmvF1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: tRNA-synt_1b	ECOD (v294.1)
E	tRNA-synt_1b	e4bmvE1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: tRNA-synt_1b	ECOD (v294.1)
D	tRNA-synt_1b	e4bmvD1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: tRNA-synt_1b	ECOD (v294.1)
C	tRNA-synt_1b	e4bmvC1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: tRNA-synt_1b	ECOD (v294.1)
B	tRNA-synt_1b	e4bmvB1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: tRNA-synt_1b	ECOD (v294.1)
A	tRNA-synt_1b	e4bmvA1	A: a/b three-layered sandwiches	X: jelly-roll	H: Double-stranded beta-helix	T: Double-stranded beta-helix	F: tRNA-synt_1b	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
J	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
I	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
H	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
G	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
F	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
E	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
D	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
C	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
B	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)
A	3.40.50.720	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	NAD(P)-binding Rossmann-like Domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	SHORT-CHAIN DEHYDROGENASE	oxidoreductase activity catalytic activity binding nucleoside phosphate binding nucleotide binding heterocyclic compound binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR036291	NAD(P)-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J	IPR002347	Short-chain dehydrogenase/reductase SDR	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.