4BKA | pdb_00004bka

crystal structure of the human EphA4 ectodomain in complex with human ephrin A5


Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
ASCOP2B Superfamilygalactose-binding domain-like 8082070 3000087 SCOP2B (2022-06-29)
B [auth C]SCOP2B SuperfamilyCupredoxins 8081942 3000886 SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
AEphrin_lbde4bkaA1 A: beta sandwichesX: jelly-rollH: Concanavalin A-likeT: Galactose-binding domain-likeF: Ephrin_lbdECOD (1.6)
Afn3e4bkaA2 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: fn3ECOD (1.6)
Afn3_9e4bkaA3 A: beta sandwichesX: Immunoglobulin-like beta-sandwichH: Immunoglobulin-relatedT: Immunoglobulin/Fibronectin type III/E set domains/PapD-likeF: fn3_9ECOD (1.6)
ATNFR_c6e4bkaA4 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: EGF/LamininF: TNFR_c6ECOD (1.6)
AKOG0196e4bkaA5 A: few secondary structure elementsX: EGF-likeH: EGF-relatedT: Complement control module/SCR domainF: KOG0196ECOD (1.6)
B [auth C]Ephrine4bkaC1 A: beta sandwichesX: Cupredoxin-likeH: Cupredoxin-related (From Topology)T: Cupredoxin-relatedF: EphrinECOD (1.6)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
PF01404Ephrin receptor ligand binding domain (Ephrin_lbd)Ephrin receptor ligand binding domainThe Eph receptors, which bind to ephrins Pfam:PF00812 are a large family of receptor tyrosine kinases. This family represents the amino terminal domain which binds the ephrin ligand [1]. Domain
PF00041Fibronectin type III domain (fn3)Fibronectin type III domainDomain
PF07699Tyrosine-protein kinase ephrin type A/B receptor-like (Ephrin_rec_like)Tyrosine-protein kinase ephrin type A/B receptor-likeThis family has repeats of a region rich in cysteines. It is found in various ephrin type A and B receptors, which have tyrosine kinase activity. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
EPHRIN TYPE-A RECEPTOR 4
B [auth C]EPHRIN-A5

InterPro: Protein Family Classification InterPro Database Homepage

Pharos: Disease Associations Pharos Homepage Annotation

ChainsDrug Target  Associated Disease
PharosP54764
B [auth C]PharosP52803