Crystal structure of the type VI effector-immunity complex Ssp1-Rap1a from Serratia marcescens
External Resource: Annotation
Domain Annotation: ECOD Classification ECOD Database Homepage
| Chains | Family Name | Domain Identifier | Architecture | Possible Homology | Homology | Topology | Family | Provenance Source (Version) |
|---|---|---|---|---|---|---|---|---|
| B | Tae4 | e4bi8B1 | A: a+b complex topology | X: Cysteine proteinases-like | H: Cysteine proteinases (From Topology) | T: Cysteine proteinases | F: Tae4 | ECOD (1.6) |
| A | EUF08238 | e4bi8A1 | A: alpha superhelices | X: Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin-like | H: Rap1a (From Topology) | T: Rap1a | F: EUF08238 | ECOD (1.6) |
Domain Annotation: CATH CATH Database Homepage
| Chain | Domain | Class | Architecture | Topology | Homology | Provenance Source (Version) |
|---|---|---|---|---|---|---|
| B | 3.90.1720.80 | Alpha Beta | Alpha-Beta Complex | endopeptidase fold (from Nostoc punctiforme) | CATH (4.3.0) | |
| B | 4.10.280.80 | Few Secondary Structures | Irregular | MYOD Basic-Helix-Loop-Helix Domain, subunit B | CATH (4.3.0) | |
| A | 1.10.890.40 | Mainly Alpha | Orthogonal Bundle | 10k-s Protein, Hypothetical Protein A | Chain A | CATH (4.3.0) |
InterPro: Protein Family Classification InterPro Database Homepage
| Chains | Accession | Name | Type |
|---|---|---|---|
| IPR025562 | Type VI secretion system (T6SS), amidase effector protein 4 | Family | |
| IPR041238 | Rap1a immunity protein | Domain |
