4BFF | pdb_00004bff

Superoxide reductase (Neelaredoxin) from Archaeoglobus fulgidus in the reduced form

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
P	d4bffp_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	automated matches	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
O	d4bffo_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	automated matches	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
N	d4bffn_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	automated matches	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
M	d4bffm_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	automated matches	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
L	d4bffl_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	automated matches	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
K	d4bffk_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	automated matches	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
J	d4bffj_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	automated matches	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
I	d4bffi_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	automated matches	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
H	d4bffh_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	automated matches	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
G	d4bffg_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	automated matches	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
F	d4bfff_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	automated matches	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
E	d4bffe_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	automated matches	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
D	d4bffd_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	automated matches	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
C	d4bffc_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	automated matches	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
B	d4bffb_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	automated matches	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)
A	d4bffa_	All beta proteins	Immunoglobulin-like beta-sandwich	Superoxide reductase-like	automated matches	automated matches	(Archaeoglobus fulgidus ) [TaxId: 2234 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
P	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2B (2022-06-29)
A	SCOP2 Family	Superoxide reductase-like	8083441	4007523	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Superoxide reductase-like	8083442	3002044	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
P	Peptidase_S8	e4bffP1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Peptidase_S8	ECOD (v294.1)
O	Peptidase_S8	e4bffO1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Peptidase_S8	ECOD (v294.1)
N	Peptidase_S8	e4bffN1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Peptidase_S8	ECOD (v294.1)
M	Peptidase_S8	e4bffM1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Peptidase_S8	ECOD (v294.1)
L	Peptidase_S8	e4bffL1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Peptidase_S8	ECOD (v294.1)
K	Peptidase_S8	e4bffK1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Peptidase_S8	ECOD (v294.1)
J	Peptidase_S8	e4bffJ1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Peptidase_S8	ECOD (v294.1)
I	Peptidase_S8	e4bffI1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Peptidase_S8	ECOD (v294.1)
H	Peptidase_S8	e4bffH1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Peptidase_S8	ECOD (v294.1)
G	Peptidase_S8	e4bffG1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Peptidase_S8	ECOD (v294.1)
F	Peptidase_S8	e4bffF1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Peptidase_S8	ECOD (v294.1)
E	Peptidase_S8	e4bffE1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Peptidase_S8	ECOD (v294.1)
D	Peptidase_S8	e4bffD1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Peptidase_S8	ECOD (v294.1)
C	Peptidase_S8	e4bffC1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Peptidase_S8	ECOD (v294.1)
B	Peptidase_S8	e4bffB1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Peptidase_S8	ECOD (v294.1)
A	Peptidase_S8	e4bffA1	A: a/b three-layered sandwiches	X: DEATH domain	H: HTH	T: winged helix domain	F: Peptidase_S8	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
P	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
O	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
N	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
M	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
L	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
K	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
J	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
I	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
H	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
G	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
F	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
E	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
D	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
C	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
B	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)
A	2.60.40.730	Mainly Beta	Sandwich	Immunoglobulin-like	SOR catalytic domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	PF01880	Desulfoferrodoxin (Desulfoferrodox)	Desulfoferrodoxin	Desulfoferrodoxins contains two types of iron: an Fe-S4 site very similar to that found in desulforedoxin from Desulfovibrio gigas and an octahedral coordinated high-spin ferrous site most probably with nitrogen/oxygen-containing ligands. Due to this ...	Desulfoferrodoxins contains two types of iron: an Fe-S4 site very similar to that found in desulforedoxin from Desulfovibrio gigas and an octahedral coordinated high-spin ferrous site most probably with nitrogen/oxygen-containing ligands. Due to this rather unusual combination of active centres, this novel protein is named desulfoferrodoxin [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	SUPEROXIDE REDUCTASE	oxidoreductase activity, acting on superoxide radicals as acceptor oxidoreductase activity antioxidant activity superoxide reductase activity catalytic activity cation binding transition metal ion binding iron ion binding ion binding binding metal ion binding small molecule binding	-	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR051233	Desulfoferrodoxin superoxide reductase	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR036073	Desulfoferrodoxin, ferrous iron-binding domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR002742	Desulfoferrodoxin, ferrous iron-binding domain	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.