4BF4 | pdb_00004bf4

PikC D50N mutant in complex with the engineered cycloalkane substrate mimic bearing a termianl N,N-dimethylamino group

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d4bf4a_	All alpha proteins	Cytochrome P450	Cytochrome P450	automated matches	automated matches	(Streptomyces venezuelae ) [TaxId: 54571 ],	SCOPe (2.08)
B	d4bf4b_	All alpha proteins	Cytochrome P450	Cytochrome P450	automated matches	automated matches	(Streptomyces venezuelae ) [TaxId: 54571 ],	SCOPe (2.08)
C	d4bf4c_	All alpha proteins	Cytochrome P450	Cytochrome P450	automated matches	automated matches	(Streptomyces venezuelae ) [TaxId: 54571 ],	SCOPe (2.08)
D	d4bf4d_	All alpha proteins	Cytochrome P450	Cytochrome P450	automated matches	automated matches	(Streptomyces venezuelae ) [TaxId: 54571 ],	SCOPe (2.08)
E	d4bf4e_	All alpha proteins	Cytochrome P450	Cytochrome P450	automated matches	automated matches	(Streptomyces venezuelae ) [TaxId: 54571 ],	SCOPe (2.08)
F	d4bf4f_	All alpha proteins	Cytochrome P450	Cytochrome P450	automated matches	automated matches	(Streptomyces venezuelae ) [TaxId: 54571 ],	SCOPe (2.08)
G	d4bf4g_	All alpha proteins	Cytochrome P450	Cytochrome P450	automated matches	automated matches	(Streptomyces venezuelae ) [TaxId: 54571 ],	SCOPe (2.08)
H	d4bf4h_	All alpha proteins	Cytochrome P450	Cytochrome P450	automated matches	automated matches	(Streptomyces venezuelae ) [TaxId: 54571 ],	SCOPe (2.08)
I	d4bf4i_	All alpha proteins	Cytochrome P450	Cytochrome P450	automated matches	automated matches	(Streptomyces venezuelae ) [TaxId: 54571 ],	SCOPe (2.08)
J	d4bf4j_	All alpha proteins	Cytochrome P450	Cytochrome P450	automated matches	automated matches	(Streptomyces venezuelae ) [TaxId: 54571 ],	SCOPe (2.08)
K	d4bf4k_	All alpha proteins	Cytochrome P450	Cytochrome P450	automated matches	automated matches	(Streptomyces venezuelae ) [TaxId: 54571 ],	SCOPe (2.08)
L	d4bf4l_	All alpha proteins	Cytochrome P450	Cytochrome P450	automated matches	automated matches	(Streptomyces venezuelae ) [TaxId: 54571 ],	SCOPe (2.08)
M	d4bf4m_	All alpha proteins	Cytochrome P450	Cytochrome P450	automated matches	automated matches	(Streptomyces venezuelae ) [TaxId: 54571 ],	SCOPe (2.08)
N	d4bf4n_	All alpha proteins	Cytochrome P450	Cytochrome P450	automated matches	automated matches	(Streptomyces venezuelae ) [TaxId: 54571 ],	SCOPe (2.08)
O	d4bf4o_	All alpha proteins	Cytochrome P450	Cytochrome P450	automated matches	automated matches	(Streptomyces venezuelae ) [TaxId: 54571 ],	SCOPe (2.08)
P	d4bf4p_	All alpha proteins	Cytochrome P450	Cytochrome P450	automated matches	automated matches	(Streptomyces venezuelae ) [TaxId: 54571 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Cytochrome P450	8078737	3001061	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cytochrome P450	8078737	3001061	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cytochrome P450	8078737	3001061	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cytochrome P450	8078737	3001061	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Cytochrome P450	8078737	3001061	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Cytochrome P450	8078737	3001061	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Cytochrome P450	8078737	3001061	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Cytochrome P450	8078737	3001061	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Cytochrome P450	8078737	3001061	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Cytochrome P450	8078737	3001061	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Cytochrome P450	8078737	3001061	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Cytochrome P450	8078737	3001061	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Cytochrome P450	8078737	3001061	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Cytochrome P450	8078737	3001061	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Cytochrome P450	8078737	3001061	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Cytochrome P450	8078737	3001061	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A		e4bf4A1	A: DEATH domain	X: 6-phosphogluconate dehydrogenase C-terminal domain-like	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: Peptidase_S8	F:	ECOD (20:10:01)
B		e4bf4B1	A: TIM beta/alpha-barrel	X: gamma-Crystallin-like	H: gamma-Crystallin-like	T: Arylsulfotran_N	F:	ECOD (20:10:01)
C		e4bf4C1	A: DEATH domain	X: 6-phosphogluconate dehydrogenase C-terminal domain-like	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: Peptidase_S8	F:	ECOD (20:10:01)
D		e4bf4D1	A: DEATH domain	X: 6-phosphogluconate dehydrogenase C-terminal domain-like	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: Peptidase_S8	F:	ECOD (20:10:01)
E		e4bf4E1	A: DEATH domain	X: 6-phosphogluconate dehydrogenase C-terminal domain-like	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: Peptidase_S8	F:	ECOD (20:10:01)
F		e4bf4F1	A: DEATH domain	X: 6-phosphogluconate dehydrogenase C-terminal domain-like	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: Peptidase_S8	F:	ECOD (20:10:01)
G		e4bf4G1	A: DEATH domain	X: 6-phosphogluconate dehydrogenase C-terminal domain-like	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: Peptidase_S8	F:	ECOD (20:10:01)
H		e4bf4H1	A: DEATH domain	X: 6-phosphogluconate dehydrogenase C-terminal domain-like	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: Peptidase_S8	F:	ECOD (20:10:01)
I		e4bf4I1	A: DEATH domain	X: 6-phosphogluconate dehydrogenase C-terminal domain-like	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: Peptidase_S8	F:	ECOD (20:10:01)
J		e4bf4J1	A: DEATH domain	X: 6-phosphogluconate dehydrogenase C-terminal domain-like	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: Peptidase_S8	F:	ECOD (20:10:01)
K		e4bf4K1	A: DEATH domain	X: 6-phosphogluconate dehydrogenase C-terminal domain-like	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: Peptidase_S8	F:	ECOD (20:10:01)
L		e4bf4L1	A: DEATH domain	X: 6-phosphogluconate dehydrogenase C-terminal domain-like	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: Peptidase_S8	F:	ECOD (20:10:01)
M		e4bf4M1	A: DEATH domain	X: 6-phosphogluconate dehydrogenase C-terminal domain-like	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: Peptidase_S8	F:	ECOD (20:10:01)
N		e4bf4N1	A: DEATH domain	X: 6-phosphogluconate dehydrogenase C-terminal domain-like	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: Peptidase_S8	F:	ECOD (20:10:01)
O		e4bf4O1	A: DEATH domain	X: 6-phosphogluconate dehydrogenase C-terminal domain-like	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: Peptidase_S8	F:	ECOD (20:10:01)
P		e4bf4P1	A: DEATH domain	X: 6-phosphogluconate dehydrogenase C-terminal domain-like	H: 6-phosphogluconate dehydrogenase C-terminal domain-like	T: Peptidase_S8	F:	ECOD (20:10:01)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.630.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450	Cytochrome P450	CATH (4.3.0)
B	1.10.630.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450	Cytochrome P450	CATH (4.3.0)
C	1.10.630.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450	Cytochrome P450	CATH (4.3.0)
D	1.10.630.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450	Cytochrome P450	CATH (4.3.0)
E	1.10.630.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450	Cytochrome P450	CATH (4.3.0)
F	1.10.630.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450	Cytochrome P450	CATH (4.3.0)
G	1.10.630.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450	Cytochrome P450	CATH (4.3.0)
H	1.10.630.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450	Cytochrome P450	CATH (4.3.0)
I	1.10.630.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450	Cytochrome P450	CATH (4.3.0)
J	1.10.630.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450	Cytochrome P450	CATH (4.3.0)
K	1.10.630.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450	Cytochrome P450	CATH (4.3.0)
L	1.10.630.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450	Cytochrome P450	CATH (4.3.0)
M	1.10.630.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450	Cytochrome P450	CATH (4.3.0)
N	1.10.630.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450	Cytochrome P450	CATH (4.3.0)
O	1.10.630.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450	Cytochrome P450	CATH (4.3.0)
P	1.10.630.10	Mainly Alpha	Orthogonal Bundle	Cytochrome p450	Cytochrome P450	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	CYTOCHROME P450 HYDROXYLASE PIKC	monooxygenase activity oxidoreductase activity catalytic activity oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen binding tetrapyrrole binding heme binding cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding	macrolide biosynthetic process polyketide metabolic process macrolide metabolic process secondary metabolic process antibiotic biosynthetic process antibiotic metabolic process polyketide biosynthetic process secondary metabolite biosynthetic process biosynthetic process lactone metabolic process lactone biosynthetic process metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR017972	Cytochrome P450, conserved site	Conserved Site
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR001128	Cytochrome P450	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR002397	Cytochrome P450, B-class	Family
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P	IPR036396	Cytochrome P450 superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.