4BBL | pdb_00004bbl

Cryo-electron microscopy reconstruction of the helical part of influenza A virus ribonucleoprotein isolated from virions.

External Resource: Annotation

Domain Annotation: ECOD Classification
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	tRNA-synt_His	e4bblA1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: tRNA-synt_His	ECOD (v294.1)
A	Acetyltransf_9	e4bblA2	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
B	Glyco_hydro_4C	e4bblB5	A: a/b three-layered sandwiches	X: DEATH domain	H: Ten stranded beta/alpha barrel	T: Ten stranded beta/alpha barrel	F: Glyco_hydro_4C	ECOD (v294.1)
C	tRNA-synt_His	e4bblC1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: tRNA-synt_His	ECOD (v294.1)
C	Acetyltransf_9	e4bblC2	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
D	tRNA-synt_His	e4bblD1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: tRNA-synt_His	ECOD (v294.1)
D	Acetyltransf_9	e4bblD2	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
G	tRNA-synt_His	e4bblG1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: tRNA-synt_His	ECOD (v294.1)
G	Acetyltransf_9	e4bblG2	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
L	tRNA-synt_His	e4bblL1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: tRNA-synt_His	ECOD (v294.1)
L	Acetyltransf_9	e4bblL2	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
M	tRNA-synt_His	e4bblM1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: tRNA-synt_His	ECOD (v294.1)
M	Acetyltransf_9	e4bblM2	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
N	tRNA-synt_His	e4bblN1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: tRNA-synt_His	ECOD (v294.1)
N	Acetyltransf_9	e4bblN2	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
P	tRNA-synt_His	e4bblP1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: tRNA-synt_His	ECOD (v294.1)
P	Acetyltransf_9	e4bblP2	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
Q	tRNA-synt_His	e4bblQ1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: tRNA-synt_His	ECOD (v294.1)
Q	Acetyltransf_9	e4bblQ2	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
R	tRNA-synt_His	e4bblR1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: tRNA-synt_His	ECOD (v294.1)
R	Acetyltransf_9	e4bblR2	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
S	tRNA-synt_His	e4bblS1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: tRNA-synt_His	ECOD (v294.1)
S	Acetyltransf_9	e4bblS2	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
T	tRNA-synt_His	e4bblT1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: tRNA-synt_His	ECOD (v294.1)
T	Acetyltransf_9	e4bblT2	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
V	tRNA-synt_His	e4bblV1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: tRNA-synt_His	ECOD (v294.1)
V	Acetyltransf_9	e4bblV2	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
W	Flu_NP	e4bblW3	A: a/b three-layered sandwiches	X: Fusion glycoprotein F2	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: Flu_NP	ECOD (v294.1)
X	tRNA-synt_His	e4bblX1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: tRNA-synt_His	ECOD (v294.1)
X	Acetyltransf_9	e4bblX2	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
U	tRNA-synt_His	e4bblU1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: tRNA-synt_His	ECOD (v294.1)
U	Acetyltransf_9	e4bblU2	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
O	tRNA-synt_His	e4bblO1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: tRNA-synt_His	ECOD (v294.1)
O	Acetyltransf_9	e4bblO2	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
K	tRNA-synt_His	e4bblK1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: tRNA-synt_His	ECOD (v294.1)
K	Acetyltransf_9	e4bblK2	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
J	tRNA-synt_His	e4bblJ1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: tRNA-synt_His	ECOD (v294.1)
J	Acetyltransf_9	e4bblJ2	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
I	tRNA-synt_His	e4bblI1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: tRNA-synt_His	ECOD (v294.1)
I	Acetyltransf_9	e4bblI2	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
H	tRNA-synt_His	e4bblH1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: tRNA-synt_His	ECOD (v294.1)
H	Acetyltransf_9	e4bblH2	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
F	tRNA-synt_His	e4bblF1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: tRNA-synt_His	ECOD (v294.1)
F	Acetyltransf_9	e4bblF2	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)
E	tRNA-synt_His	e4bblE1	A: a/b three-layered sandwiches	X: YrdC/RibB	H: SH3	T: SH3	F: tRNA-synt_His	ECOD (v294.1)
E	Acetyltransf_9	e4bblE2	A: a/b three-layered sandwiches	X: RuvA-C	H: post-HMGL domain-like	T: post-HMGL domain-like	F: Acetyltransf_9	ECOD (v294.1)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
Y, Z	RNA	-	-	-
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	NUCLEOPROTEIN	structural molecule activity RNA binding binding nucleic acid binding	RNA metabolic process viral life cycle primary metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process negative stranded viral RNA replication viral genome replication biosynthetic process viral RNA genome replication viral process RNA metabolic process viral life cycle primary metabolic process nucleobase-containing compound biosynthetic process macromolecule biosynthetic process nucleic acid metabolic process RNA biosynthetic process nucleobase-containing compound metabolic process nucleic acid biosynthetic process negative stranded viral RNA replication viral genome replication biosynthetic process viral RNA genome replication viral process metabolic process cellular process macromolecule metabolic process biological process involved in interspecies interaction between organisms viral penetration into host nucleus intracellular transport of virus transport of virus biological process involved in symbiotic interaction symbiont entry into host cell symbiont entry into host biological process involved in interaction with host	host cellular component cellular anatomical structure host cell other organism part host intracellular membrane-bounded organelle host intracellular part host cell part host intracellular region host cell nucleus host intracellular organelle protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid host cellular component cellular anatomical structure host cell other organism part host intracellular membrane-bounded organelle host intracellular part host cell part host intracellular region host cell nucleus host intracellular organelle protein-containing complex ribonucleoprotein complex viral nucleocapsid viral capsid virion component helical viral capsid

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X	IPR002141	Influenza virus nucleoprotein (NP)	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

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