4B86 | pdb_00004b86

Crystal structure of the MSL1-MSL2 complex (3.5A)

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
J	SCOP2B Superfamily	MSL1 dimerisation region-like	8092986	3002655	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	MSL1 dimerisation region-like	8092986	3002655	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	MSL1 dimerisation region-like	8092986	3002655	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	MSL1 dimerisation region-like	8092986	3002655	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	MSL1 dimerisation region-like	8092986	3002655	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	MSL1 dimerisation region-like	8092986	3002655	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
L	zf-RING_6	e4b86L2	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: RING/U-box	F: zf-RING_6	ECOD (1.6)
K	zf-C3HC4_4	e4b86K3	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: RING/U-box	F: zf-C3HC4_4	ECOD (1.6)
H	zf-RING_6	e4b86H2	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: RING/U-box	F: zf-RING_6	ECOD (1.6)
G	zf-RING_6	e4b86G1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: RING/U-box	F: zf-RING_6	ECOD (1.6)
D	zf-C3HC4_4	e4b86D3	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: RING/U-box	F: zf-C3HC4_4	ECOD (1.6)
C	zf-RING_6	e4b86C1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: RING/U-box	F: zf-RING_6	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
F	1.20.5.170	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
E	1.20.5.170	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
B	1.20.5.170	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
A	1.20.5.170	Mainly Alpha	Up-down Bundle	Single alpha-helices involved in coiled-coils or other helix-helix interfaces		CATH (4.3.0)
L	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)
K	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)
H	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)
G	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)
D	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)
C	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, E, F, I A, B, E, F, I, J	PF16801	Dimerisation domain of Male-specific-Lethal 1 (MSL1_dimer)	Dimerisation domain of Male-specific-Lethal 1	-	Coiled-coil
C, D, G, H, K C, D, G, H, K, L	PF16685	zinc RING finger of MSL2 (zf-RING_10)	zinc RING finger of MSL2	zf-RING_10 is an N-terminal domain on E3 ubiquitin-protein ligase msl-2 proteins. The domain binds MSL1 and exhibits ubiquitin E3 ligase activity towards H2B K34, the histone proteins [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, E, F, I A, B, E, F, I, J	MALE-SPECIFIC LETHAL 1 HOMOLOG	protein-macromolecule adaptor activity molecular adaptor activity	regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process cellular process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process cellular component organization chromatin organization chromatin remodeling cellular component organization or biogenesis	protein-containing complex intracellular anatomical structure catalytic complex intracellular membraneless organelle chromatin chromosome transferase complex histone acetyltransferase complex MSL complex acetyltransferase complex H4 histone acetyltransferase complex intracellular organelle cellular anatomical structure organelle protein-containing complex intracellular anatomical structure catalytic complex intracellular membraneless organelle chromatin chromosome transferase complex histone acetyltransferase complex MSL complex acetyltransferase complex H4 histone acetyltransferase complex intracellular organelle cellular anatomical structure organelle membraneless organelle protein acetyltransferase complex intracellular protein-containing complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nuclear speck ribonucleoprotein granule nuclear body nucleoplasm organelle lumen supramolecular complex nuclear ribonucleoprotein granule nuclear lumen
C, D, G, H, K C, D, G, H, K, L	MALE-SPECIFIC LETHAL 2 HOMOLOG	DNA binding binding chromatin binding double-stranded DNA binding DNA-DNA tethering activity nucleic acid binding chromatin DNA binding promoter-enhancer loop anchoring activity chromatin loop anchoring activity molecular adaptor activity aminoacyltransferase activity catalytic activity, acting on a protein acyltransferase activity histone H2B ubiquitin ligase activity DNA binding binding chromatin binding double-stranded DNA binding DNA-DNA tethering activity nucleic acid binding chromatin DNA binding promoter-enhancer loop anchoring activity chromatin loop anchoring activity molecular adaptor activity aminoacyltransferase activity catalytic activity, acting on a protein acyltransferase activity histone H2B ubiquitin ligase activity transferase activity histone ubiquitin ligase activity ubiquitin-protein transferase activity ubiquitin-like protein transferase activity ubiquitin-like protein ligase activity ubiquitin protein ligase activity histone modifying activity catalytic activity cation binding transition metal ion binding zinc ion binding ion binding metal ion binding small molecule binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process regulation of cellular process positive regulation of DNA-templated transcription positive regulation of biological process RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process positive regulation of cellular process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of biological process biological regulation primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process epigenetic regulation of gene expression cellular component organization chromatin organization chromatin remodeling cellular component organization or biogenesis protein ubiquitination macromolecule modification protein metabolic process post-translational protein modification protein modification process protein modification by small protein conjugation protein modification by small protein conjugation or removal protein monoubiquitination	protein-containing complex intracellular anatomical structure catalytic complex intracellular membraneless organelle chromatin chromosome transferase complex histone acetyltransferase complex MSL complex acetyltransferase complex H4 histone acetyltransferase complex intracellular organelle cellular anatomical structure organelle protein-containing complex intracellular anatomical structure catalytic complex intracellular membraneless organelle chromatin chromosome transferase complex histone acetyltransferase complex MSL complex acetyltransferase complex H4 histone acetyltransferase complex intracellular organelle cellular anatomical structure organelle membraneless organelle protein acetyltransferase complex intracellular protein-containing complex membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, E, F, I A, B, E, F, I, J	IPR031840	Protein male-specific lethal-1, dimerisation domain	Domain
A, B, E, F, I A, B, E, F, I, J	IPR026711	Protein male-specific lethal-1	Family
A, B, E, F, I A, B, E, F, I, J	IPR029332	PEHE domain	Domain
C, D, G, H, K C, D, G, H, K, L	IPR033467	Tesmin/TSO1-like CXC domain	Domain
C, D, G, H, K C, D, G, H, K, L	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
C, D, G, H, K C, D, G, H, K, L	IPR037922	E3 ubiquitin-protein ligase MSL2	Family
C, D, G, H, K C, D, G, H, K, L	IPR032049	E3 ubiquitin-protein ligase Msl2, CXC domain	Domain
C, D, G, H, K C, D, G, H, K, L	IPR001841	Zinc finger, RING-type	Domain
C, D, G, H, K C, D, G, H, K, L	IPR032043	E3 ubiquitin-protein ligase Msl2, zinc RING finger	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, E, F, I A, B, E, F, I, J	Pharos: Q68DK7	chronic obstructive pulmonary disease ovarian cancer subependymal giant cell astrocytoma diabetes mellitus Pick disease tuberculosis myopathy plasma cell myeloma
C, D, G, H, K C, D, G, H, K, L	Pharos: Q9HCI7	atrial fibrillation malignant mesothelioma myocardial infarction attention deficit hyperactivity disorder, inattentive type medulloblastoma osteosarcoma bipolar disorder metabolic syndrome X psoriasis

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.