4ALZ | pdb_00004alz

The Yersinia T3SS basal body component YscD reveals a different structural periplasmatic domain organization to known homologue PrgH

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	BON domain-like	8046000	4005298	SCOP2 (2022-06-29)
A	SCOP2 Family	BON domain-like	8092174	4005298	SCOP2 (2022-06-29)
A	SCOP2 Family	BON domain-like	8092175	4005298	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	BON domain-like	8092176	3002566	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	BON domain-like	8092177	3002566	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	BON domain-like	8092178	3002566	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Yop-YscD_ppl_1st	e4alzA1	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Periplasmic binding protein-like II	T: Periplasmic binding protein-like II	F: Yop-YscD_ppl_1st	ECOD (v294.1)
A	Yop-YscD_ppl_2nd	e4alzA2	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Periplasmic binding protein-like II	T: Periplasmic binding protein-like II	F: Yop-YscD_ppl_2nd	ECOD (v294.1)
A	SBP_bac_1	e4alzA3	A: a/b three-layered sandwiches	X: P-loop domains-like	H: Periplasmic binding protein-like II	T: Periplasmic binding protein-like II	F: SBP_bac_1	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.30.1340.30	Alpha Beta	2-Layer Sandwich	Histidine-containing Protein	Chain: A	CATH (4.3.0)
A	3.30.70.1770	Alpha Beta	2-Layer Sandwich	Alpha-Beta Plaits		CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	YOP PROTEINS TRANSLOCATION PROTEIN D	-	-	cell periphery cellular anatomical structure plasma membrane membrane

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR012843	YscD	Family
A	IPR057770	YscD/Y4YQ, C-terminal domain	Domain
A	IPR032034	YscD-like, Bon-like domain 1	Domain
A	IPR008984	SMAD/FHA domain superfamily	Homologous Superfamily
A	IPR053946	YscD-like, Bon-like domain 3	Domain
A	IPR032030	YscD, cytoplasmic domain	Domain
A	IPR053947	YscD-like, Bon-like domain 2	Domain

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.