Annotations: 4A9Z

CRYSTAL STRUCTURE OF HUMAN P63 TETRAMERIZATION DOMAIN

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d4a9zd_	All alpha proteins	p53 tetramerization domain	p53 tetramerization domain	automated matches	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
B	d4a9zb_	All alpha proteins	p53 tetramerization domain	p53 tetramerization domain	automated matches	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)
A	d4a9za_	All alpha proteins	p53 tetramerization domain	p53 tetramerization domain	automated matches	automated matches	HUMAN (Homo sapiens ) [TaxId: 9606 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	p53 tetramerization domain	8072271	3000414	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	p53 tetramerization domain	8072271	3000414	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	p53 tetramerization domain	8072271	3000414	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	p53 tetramerization domain	8072271	3000414	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	DHDPS	e4a9zD1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: DHDPS	ECOD (v295.2)
C	DHDPS	e4a9zC1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: DHDPS	ECOD (v295.2)
B	DHDPS	e4a9zB1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: DHDPS	ECOD (v295.2)
A	H2TH	e4a9zA1	A: alpha arrays	X: OB-fold	H: RIFT-related	T: Phage tail proteins	F: H2TH	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	4.10.170.10	Few Secondary Structures	Irregular	p53, subunit A	p53-like tetramerisation domain	CATH (4.3.0)
C	4.10.170.10	Few Secondary Structures	Irregular	p53, subunit A	p53-like tetramerisation domain	CATH (4.3.0)
B	4.10.170.10	Few Secondary Structures	Irregular	p53, subunit A	p53-like tetramerisation domain	CATH (4.3.0)
A	4.10.170.10	Few Secondary Structures	Irregular	p53, subunit A	p53-like tetramerisation domain	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF07710	P53 tetramerisation motif (P53_tetramer)	P53 tetramerisation motif	-	Motif

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	TUMOR PROTEIN 63	protein binding binding WW domain binding protein domain specific binding sequence-specific DNA binding DNA binding nucleic acid binding chromatin binding promoter-specific chromatin binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity protein binding binding WW domain binding protein domain specific binding sequence-specific DNA binding DNA binding nucleic acid binding chromatin binding promoter-specific chromatin binding DNA-binding transcription factor activity, RNA polymerase II-specific transcription regulator activity DNA-binding transcription factor activity DNA-binding transcription activator activity, RNA polymerase II-specific DNA-binding transcription activator activity identical protein binding p53 binding double-stranded DNA binding RNA polymerase II transcription regulatory region sequence-specific DNA binding cis-regulatory region sequence-specific DNA binding sequence-specific double-stranded DNA binding transcription cis-regulatory region binding transcription regulatory region nucleic acid binding RNA polymerase II cis-regulatory region sequence-specific DNA binding MDM2/MDM4 family protein binding damaged DNA binding	cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation cellular response to stimulus cellular response to stress response to stimulus DNA damage response response to stress cellular process developmental process spermatogenesis sexual reproduction reproductive process multicellular organismal reproductive process developmental process involved in reproduction male gamete generation gamete generation positive regulation of cell communication regulation of cellular process positive regulation of signal transduction signaling positive regulation of biological process regulation of signal transduction regulation of programmed cell death positive regulation of apoptotic signaling pathway cell communication positive regulation of response to stimulus signal transduction positive regulation of cellular process regulation of biological process regulation of signaling positive regulation of programmed cell death regulation of apoptotic process biological regulation cell death positive regulation of apoptotic process apoptotic signaling pathway regulation of response to stimulus regulation of cell communication apoptotic process programmed cell death positive regulation of signaling regulation of apoptotic signaling pathway epidermal cell division cell division regulation of epidermal cell division regulation of cell division cellular component organization cellular component biogenesis cellular component assembly protein-containing complex organization protein complex oligomerization protein tetramerization protein-containing complex assembly cellular component organization or biogenesis establishment of skin barrier epithelium development skin development skin epidermis development epidermis development anatomical structure development animal organ development tissue development animal gross anatomical part developmental process fibroblast apoptotic process positive regulation of fibroblast apoptotic process regulation of fibroblast apoptotic process intracellular receptor signaling pathway response to lipid negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of biological process hormone-mediated signaling pathway intracellular signal transduction negative regulation of cell communication negative regulation of intracellular steroid hormone receptor signaling pathway cellular response to endogenous stimulus response to hormone regulation of intracellular signal transduction response to steroid hormone regulation of intracellular steroid hormone receptor signaling pathway regulation of intracellular estrogen receptor signaling pathway negative regulation of cellular process nuclear receptor-mediated steroid hormone signaling pathway cellular response to steroid hormone stimulus negative regulation of intracellular estrogen receptor signaling pathway steroid hormone receptor signaling pathway cellular response to hormone stimulus negative regulation of response to stimulus response to endogenous stimulus negative regulation of signal transduction estrogen receptor signaling pathway cellular response to chemical stimulus response to chemical cellular response to lipid nuclear receptor-mediated signaling pathway positive regulation of somatic stem cell population maintenance regulation of somatic stem cell population maintenance multicellular organismal process regulation of developmental process regulation of stem cell population maintenance stem cell population maintenance positive regulation of developmental process positive regulation of stem cell population maintenance somatic stem cell population maintenance positive regulation of multicellular organismal process regulation of multicellular organismal process maintenance of cell number positive regulation of DNA-templated transcription RNA metabolic process positive regulation of macromolecule biosynthetic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process positive regulation of metabolic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II positive regulation of biosynthetic process positive regulation of macromolecule metabolic process regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of biosynthetic process regulation of transcription by RNA polymerase II primary metabolic process regulation of macromolecule metabolic process positive regulation of transcription by RNA polymerase II nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process positive regulation of RNA metabolic process regulation of gene expression biosynthetic process positive regulation of RNA biosynthetic process metabolic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription regulation of metabolic process negative regulation of RNA biosynthetic process negative regulation of nucleobase-containing compound metabolic process negative regulation of macromolecule metabolic process negative regulation of DNA-templated transcription negative regulation of metabolic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process negative regulation of RNA metabolic process cell population proliferation positive regulation of cell population proliferation regulation of cell population proliferation regulation of osteoblast differentiation cellular developmental process regulation of cell differentiation osteoblast differentiation positive regulation of osteoblast differentiation ossification positive regulation of cell differentiation cell differentiation regulation of cellular senescence cellular senescence negative regulation of cellular senescence regulation of cell cycle phase transition regulation of cell cycle process cell cycle phase transition regulation of cell cycle G1/S phase transition cell cycle G1/S phase transition positive regulation of cell cycle positive regulation of cell cycle G1/S phase transition positive regulation of cell cycle phase transition positive regulation of cell cycle process cell cycle regulation of cell cycle cell cycle process signal transduction by p53 class mediator intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator intrinsic apoptotic signaling pathway by p53 class mediator intrinsic apoptotic signaling pathway in response to DNA damage intrinsic apoptotic signaling pathway cell surface receptor signaling pathway Notch signaling pathway regulation of Notch signaling pathway positive regulation of Notch signaling pathway	protein-containing complex transcription regulator complex somatodendritic compartment cell projection cellular anatomical structure dendrite dendritic tree neuron projection plasma membrane bounded cell projection intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle protein-containing complex transcription regulator complex somatodendritic compartment cell projection cellular anatomical structure dendrite dendritic tree neuron projection plasma membrane bounded cell projection intracellular anatomical structure cytoplasm intracellular organelle organelle membraneless organelle intracellular membraneless organelle chromatin chromosome membrane-bounded organelle nucleus membrane-enclosed lumen intracellular membrane-bounded organelle intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR012346	p53/RUNT-type transcription factor, DNA-binding domain superfamily	Homologous Superfamily
A, B, C, D	IPR036674	p53-like tetramerisation domain superfamily	Homologous Superfamily
A, B, C, D	IPR011615	p53, DNA-binding domain	Domain
A, B, C, D	IPR057064	p53, central conserved site	Conserved Site
A, B, C, D	IPR001660	Sterile alpha motif domain	Domain
A, B, C, D	IPR002117	p53 tumour suppressor family	Family
A, B, C, D	IPR008967	p53-like transcription factor, DNA-binding domain superfamily	Homologous Superfamily
A, B, C, D	IPR010991	p53, tetramerisation domain	Domain
A, B, C, D	IPR037611	Tumour protein p63, SAM domain	Domain
A, B, C, D	IPR013761	Sterile alpha motif/pointed domain superfamily	Homologous Superfamily

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B, C, D	: Q9H3D4	ADULT syndrome Rapp-Hodgkin syndrome EEC syndrome cleft palate squamous cell carcinoma ankyloblepharon-ectodermal defects-cleft lip/palate syndrome limb-mammary syndrome ectrodactyly, ectodermal dysplasia, and cleft lip-palate syndrome 3 split hand-foot malformation 4 Skin Abnormalities lung adenocarcinoma squamous cell neoplasm bladder exstrophy breast disease cleft lip ADULT syndrome Rapp-Hodgkin syndrome EEC syndrome cleft palate squamous cell carcinoma ankyloblepharon-ectodermal defects-cleft lip/palate syndrome limb-mammary syndrome ectrodactyly, ectodermal dysplasia, and cleft lip-palate syndrome 3 split hand-foot malformation 4 Skin Abnormalities lung adenocarcinoma squamous cell neoplasm bladder exstrophy breast disease cleft lip split hand-foot malformation sweat gland neoplasm ovarian cancer carcinoma sarcomatoid carcinoma tubular adenocarcinoma colorectal cancer lung carcinoma adenocarcinoma granular cell carcinoma psoriasis childhood acute lymphoblastic leukemia intellectual disability large cell medulloblastoma undifferentiated carcinoma colorectal carcinoma cribriform carcinoma of breast malignant pancreatic neoplasm esophageal adenocarcinoma osteosarcoma pancreatic neoplasm interstitial cystitis lung benign neoplasm malignant colon neoplasm acute lymphoblastic leukemia dermatomyositis myopathy amelogenesis imperfecta Emery-Dreifuss muscular dystrophy non-small cell lung carcinoma exocrine pancreatic carcinoma breast cancer glioblastoma peeling skin syndrome cervical cancer cleft lip and alveolus juvenile dermatomyositis squamous cell lung carcinoma malignant glioma cribriform carcinoma ectrodactyly, ectodermal dysplasia, and cleft lip-palate syndrome 1 malignant tumor of neck amyotrophic lateral sclerosis orofacial cleft 8 atypical teratoid rhabdoid tumor ovarian neoplasm breast carcinoma

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.