Annotations: 3ZVR

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2 Family	Dynamin G domain-like	8019686	4004047	SCOP2 (2022-06-29)
A	SCOP2 Family	Pleckstrin-homology domain (PH domain)	8019690	4002395	SCOP2 (2022-06-29)
A	SCOP2 Family	Dynamin stalk region-like	8019693	4004048	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Ras-like P-loop GTPases	8019687	3002022	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	PH domain-like	8019691	3000134	SCOP2 (2022-06-29)
A	SCOP2 Superfamily	Dynamin stalk-like	8019694	3002023	SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Fer2	e3zvrA1	A: a/b three-layered sandwiches	X: Four-helical up-and-down bundle	H: Ubiquitin-related	T: Ubiquitin-like	F: Fer2	ECOD (v294.1)
A	PDH_E1_M	e3zvrA2	A: a/b three-layered sandwiches	X: Thioredoxin-like	H: Thioredoxin-like	T: Thioredoxin-like	F: PDH_E1_M	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
A	1.20.120.1240	Mainly Alpha	Up-down Bundle	Four Helix Bundle (Hemerythrin (Met), subunit A)	Dynamin, middle domain	CATH (4.3.0)
A	2.30.29.30	Mainly Beta	Roll	PH-domain like	Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB)	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF01031	Dynamin central region (Dynamin_M)	Dynamin central region	-	Family
A	PF00350	Dynamin family (Dynamin_N)	Dynamin family		Domain
A	PF02212	Dynamin GTPase effector domain (GED)	Dynamin GTPase effector domain	-	Family
A	PF00169	PH domain (PH)	PH domain	PH stands for pleckstrin homology.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	DYNAMIN-1	SH3 domain binding protein binding binding protein domain specific binding cytoskeletal protein binding microtubule binding tubulin binding protein-containing complex binding nitric-oxide synthase binding enzyme binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides SH3 domain binding protein binding binding protein domain specific binding cytoskeletal protein binding microtubule binding tubulin binding protein-containing complex binding nitric-oxide synthase binding enzyme binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity identical protein binding D2 dopamine receptor binding signaling receptor binding G protein-coupled receptor binding dopamine receptor binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding phosphatidylinositol-4,5-bisphosphate binding phosphatidylinositol bisphosphate binding phospholipid binding lipid binding phosphatidylinositol phosphate binding phosphatidylinositol binding GDP binding protein serine/threonine kinase binding kinase binding protein kinase binding protein homodimerization activity protein dimerization activity phosphatidylinositol-3,4,5-trisphosphate binding	regulation of localization cellular localization regulation of biological process transport regulation of transport positive regulation of synaptic vesicle recycling synaptic vesicle cycle biological regulation positive regulation of biological process regulation of synaptic vesicle recycling establishment of localization vesicle-mediated transport vesicle-mediated transport in synapse synaptic vesicle recycling localization regulation of localization cellular localization regulation of biological process transport regulation of transport positive regulation of synaptic vesicle recycling synaptic vesicle cycle biological regulation positive regulation of biological process regulation of synaptic vesicle recycling establishment of localization vesicle-mediated transport vesicle-mediated transport in synapse synaptic vesicle recycling localization positive regulation of transport establishment of localization in cell cellular process import into cell receptor internalization receptor-mediated endocytosis endocytosis membrane organization cellular component organization membrane fission vesicle scission cellular component organization or biogenesis establishment of organelle localization vesicle budding from membrane presynaptic endocytosis vesicle organization organelle localization synaptic vesicle budding synaptic vesicle localization synaptic vesicle endocytosis vesicle localization establishment of vesicle localization synaptic vesicle budding from presynaptic endocytic zone membrane organelle organization synaptic vesicle transport regulation of cellular process regulation of cellular component organization regulation of synaptic vesicle endocytosis regulation of endocytosis regulation of vesicle-mediated transport trans-synaptic signaling regulation of signaling modulation of chemical synaptic transmission signaling cell-cell signaling chemical synaptic transmission cell communication synaptic signaling regulation of trans-synaptic signaling anterograde trans-synaptic signaling regulation of cell communication endosome organization endomembrane system organization cellular response to stimulus negative adaptation of signaling pathway response to stimulus negative regulation of signaling negative regulation of biological process desensitization of G protein-coupled receptor signaling pathway regulation of signal transduction negative regulation of G protein-coupled receptor signaling pathway negative regulation of cell communication negative regulation of cellular process signal transduction regulation of G protein-coupled receptor signaling pathway G protein-coupled receptor internalization negative regulation of response to stimulus negative regulation of signal transduction regulation of response to stimulus adaptation of signaling pathway G protein-coupled receptor signaling pathway protein-containing complex organization protein homotetramerization cellular component biogenesis cellular component assembly protein complex oligomerization protein tetramerization protein-containing complex assembly protein homooligomerization clathrin coat assembly involved in endocytosis clathrin coat assembly clathrin-dependent endocytosis regulation of cellular component size regulation of vesicle size regulation of biological quality regulation of anatomical structure size response to chemical response to oxygen-containing compound response to nitrogen compound response to amyloid-beta positive regulation of cellular component organization positive regulation of endocytosis positive regulation of cellular process positive regulation of synaptic vesicle endocytosis	cellular anatomical structure clathrin-coated pit membrane endomembrane system presynaptic endocytic zone synapse plasma membrane presynaptic membrane synaptic membrane cell periphery presynapse presynaptic endocytic zone membrane cell junction plasma membrane region cellular anatomical structure clathrin-coated pit membrane endomembrane system presynaptic endocytic zone synapse plasma membrane presynaptic membrane synaptic membrane cell periphery presynapse presynaptic endocytic zone membrane cell junction plasma membrane region photoreceptor inner segment membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle cytoplasm vesicle endocytic vesicle glutamatergic synapse Golgi apparatus transport vesicle synaptic vesicle secretory vesicle exocytic vesicle membrane coat protein-containing complex membrane protein complex coated membrane polymeric cytoskeletal fiber intracellular membraneless organelle cytoskeleton membraneless organelle supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton chromaffin granule secretory granule axon cell projection main axon neuron projection varicosity plasma membrane bounded cell projection clathrin-coated vesicle coated vesicle photoreceptor ribbon synapse ribbon synapse

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR020850	GTPase effector domain	Domain
A	IPR001401	Dynamin, GTPase domain	Domain
A	IPR045063	Dynamin, N-terminal	Domain
A	IPR019762	Dynamin, GTPase region, conserved site	Conserved Site
A	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A	IPR001849	Pleckstrin homology domain	Domain
A	IPR030381	Dynamin-type guanine nucleotide-binding (G) domain	Domain
A	IPR011993	PH-like domain superfamily	Homologous Superfamily
A	IPR003130	Dynamin GTPase effector	Domain
A	IPR000375	Dynamin stalk domain	Domain
A	IPR022812	Dynamin	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.