3ZPV | pdb_00003zpv

Crystal structure of Drosophila Pygo PHD finger in complex with Legless HD1 domain

External Resource: Annotation

Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
Y [auth O]	PHD	e3zpvO1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: PHD	ECOD (1.6)
O [auth E]	PHD	e3zpvE1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: PHD	ECOD (1.6)
IA [auth Y]	PHD	e3zpvY1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: PHD	ECOD (1.6)
W [auth M]	PHD	e3zpvM1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: PHD	ECOD (1.6)
U [auth K]	PHD	e3zpvK1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: PHD	ECOD (1.6)
S [auth I]	PHD	e3zpvI1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: PHD	ECOD (1.6)
Q [auth G]	PHD	e3zpvG1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: PHD	ECOD (1.6)
M [auth C]	PHD	e3zpvC1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: PHD	ECOD (1.6)
K [auth A]	PHD	e3zpvA1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: PHD	ECOD (1.6)
J [auth 9]	PHD	e3zpv91	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: PHD	ECOD (1.6)
H [auth 7]	PHD	e3zpv71	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: PHD	ECOD (1.6)
GA [auth W]	PHD	e3zpvW1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: PHD	ECOD (1.6)
F [auth 5]	PHD	e3zpv51	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: PHD	ECOD (1.6)
EA [auth U]	PHD	e3zpvU1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: PHD	ECOD (1.6)
D [auth 3]	PHD	e3zpv31	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: PHD	ECOD (1.6)
CA [auth S]	PHD	e3zpvS1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: PHD	ECOD (1.6)
B [auth 1]	PHD	e3zpv11	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: PHD	ECOD (1.6)
AA [auth Q]	PHD	e3zpvQ1	A: few secondary structure elements	X: RING/U-box-like	H: RING/U-box-like	T: FYVE/PHD zinc finger	F: PHD	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
Y [auth O]	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)
O [auth E]	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)
IA [auth Y]	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)
W [auth M]	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)
U [auth K]	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)
S [auth I]	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)
Q [auth G]	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)
M [auth C]	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)
K [auth A]	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)
J [auth 9]	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)
H [auth 7]	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)
GA [auth W]	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)
F [auth 5]	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)
EA [auth U]	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)
D [auth 3]	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)
CA [auth S]	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)
B [auth 1]	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)
AA [auth Q]	3.30.40.10	Alpha Beta	2-Layer Sandwich	Herpes Virus-1	Zinc/RING finger domain, C3HC4 (zinc finger)	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
IA [auth Y], O [auth E], Y [auth O]	PROTEIN PYGOPUS	histone reader activity histone H3 reader activity chromatin-protein adaptor activity histone H3K4me3 reader activity protein-macromolecule adaptor activity molecular adaptor activity transcription coactivator activity transcription regulator activity transcription coregulator activity cation binding transition metal ion binding zinc ion binding ion binding binding histone reader activity histone H3 reader activity chromatin-protein adaptor activity histone H3K4me3 reader activity protein-macromolecule adaptor activity molecular adaptor activity transcription coactivator activity transcription regulator activity transcription coregulator activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding	regulation of biological process regulation of cellular process regulation of cell adhesion biological regulation negative regulation of biological process negative regulation of cell adhesion cell adhesion cell-cell adhesion negative regulation of cell-cell adhesion negative regulation of cellular process regulation of cell-cell adhesion cellular process delamination developmental process regulation of biological process regulation of cellular process regulation of cell adhesion biological regulation negative regulation of biological process negative regulation of cell adhesion cell adhesion cell-cell adhesion negative regulation of cell-cell adhesion negative regulation of cellular process regulation of cell-cell adhesion cellular process delamination developmental process multicellular organismal process blastoderm segmentation embryonic pattern specification segmentation pattern specification process embryo development regionalization multicellular organism development anatomical structure development segment polarity determination periodic partitioning imaginal disc morphogenesis developmental growth imaginal disc-derived wing morphogenesis metamorphosis wing disc morphogenesis imaginal disc development instar larval or pupal morphogenesis post-embryonic animal morphogenesis post-embryonic development animal organ morphogenesis imaginal disc-derived wing expansion appendage development post-embryonic appendage morphogenesis growth animal organ development wing disc development instar larval or pupal development developmental growth involved in morphogenesis imaginal disc-derived appendage morphogenesis anatomical structure morphogenesis appendage morphogenesis imaginal disc-derived appendage development cellular response to stimulus cell surface receptor signaling pathway response to stimulus signaling canonical Wnt signaling pathway cell communication signal transduction Wnt signaling pathway RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process eye-antennal disc development positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process larval chitin-based cuticle development chitin-based cuticle development cuticle development involved in chitin-based cuticle molting cycle cuticle development chitin-based larval cuticle pattern formation larval development cuticle pattern formation molting cycle instar larval development molting cycle, chitin-based cuticle	RNA polymerase II transcription regulator complex membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex transcription regulator complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle beta-catenin-TCF complex membrane-enclosed lumen intracellular organelle lumen RNA polymerase II transcription regulator complex membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex transcription regulator complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle beta-catenin-TCF complex membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], F [auth 5], GA [auth W], H [auth 7], J [auth 9], K [auth A], M [auth C], Q [auth G], S [auth I], U [auth K], W [auth M]	PROTEIN PYGOPUS	histone reader activity histone H3 reader activity chromatin-protein adaptor activity histone H3K4me3 reader activity protein-macromolecule adaptor activity molecular adaptor activity transcription coactivator activity transcription regulator activity transcription coregulator activity cation binding transition metal ion binding zinc ion binding ion binding binding histone reader activity histone H3 reader activity chromatin-protein adaptor activity histone H3K4me3 reader activity protein-macromolecule adaptor activity molecular adaptor activity transcription coactivator activity transcription regulator activity transcription coregulator activity cation binding transition metal ion binding zinc ion binding ion binding binding metal ion binding small molecule binding	regulation of biological process regulation of cellular process regulation of cell adhesion biological regulation negative regulation of biological process negative regulation of cell adhesion cell adhesion cell-cell adhesion negative regulation of cell-cell adhesion negative regulation of cellular process regulation of cell-cell adhesion cellular process delamination developmental process regulation of biological process regulation of cellular process regulation of cell adhesion biological regulation negative regulation of biological process negative regulation of cell adhesion cell adhesion cell-cell adhesion negative regulation of cell-cell adhesion negative regulation of cellular process regulation of cell-cell adhesion cellular process delamination developmental process multicellular organismal process blastoderm segmentation embryonic pattern specification segmentation pattern specification process embryo development regionalization multicellular organism development anatomical structure development segment polarity determination periodic partitioning imaginal disc morphogenesis developmental growth imaginal disc-derived wing morphogenesis metamorphosis wing disc morphogenesis imaginal disc development instar larval or pupal morphogenesis post-embryonic animal morphogenesis post-embryonic development animal organ morphogenesis imaginal disc-derived wing expansion appendage development post-embryonic appendage morphogenesis growth animal organ development wing disc development instar larval or pupal development developmental growth involved in morphogenesis imaginal disc-derived appendage morphogenesis anatomical structure morphogenesis appendage morphogenesis imaginal disc-derived appendage development cellular response to stimulus cell surface receptor signaling pathway response to stimulus signaling canonical Wnt signaling pathway cell communication signal transduction Wnt signaling pathway RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process eye-antennal disc development positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process larval chitin-based cuticle development chitin-based cuticle development cuticle development involved in chitin-based cuticle molting cycle cuticle development chitin-based larval cuticle pattern formation larval development cuticle pattern formation molting cycle instar larval development molting cycle, chitin-based cuticle	RNA polymerase II transcription regulator complex membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex transcription regulator complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle beta-catenin-TCF complex membrane-enclosed lumen intracellular organelle lumen RNA polymerase II transcription regulator complex membrane-bounded organelle protein-containing complex intracellular anatomical structure nucleus nuclear protein-containing complex transcription regulator complex intracellular membrane-bounded organelle intracellular organelle cellular anatomical structure organelle beta-catenin-TCF complex membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen
A [auth 0], BA [auth R], C [auth 2], DA [auth T], E [auth 4], A [auth 0], BA [auth R], C [auth 2], DA [auth T], E [auth 4], FA [auth V], G [auth 6], HA [auth X], I [auth 8], JA [auth Z], L [auth B], N [auth D], P [auth F], R [auth H], T [auth J], V [auth L], X [auth N], Z [auth P]	PROTEIN BCL9 HOMOLOG	transcription coactivator activity transcription regulator activity transcription coregulator activity protein-macromolecule adaptor activity molecular adaptor activity	developmental process multicellular organismal process blastoderm segmentation embryonic pattern specification segmentation pattern specification process embryo development regionalization multicellular organism development anatomical structure development segment polarity determination periodic partitioning imaginal disc morphogenesis animal organ development developmental process multicellular organismal process blastoderm segmentation embryonic pattern specification segmentation pattern specification process embryo development regionalization multicellular organism development anatomical structure development segment polarity determination periodic partitioning imaginal disc morphogenesis animal organ development histoblast morphogenesis instar larval or pupal development metamorphosis cell morphogenesis anatomical structure morphogenesis sternite morphogenesis instar larval or pupal morphogenesis imaginal disc development post-embryonic animal morphogenesis post-embryonic development animal organ morphogenesis cellular response to stimulus regulation of biological process regulation of cellular process cell surface receptor signaling pathway response to stimulus signaling canonical Wnt signaling pathway biological regulation cell communication cellular process signal transduction Wnt signaling pathway RNA metabolic process regulation of primary metabolic process nucleobase-containing compound metabolic process RNA biosynthetic process nucleic acid biosynthetic process DNA-templated transcription regulation of RNA metabolic process transcription by RNA polymerase II regulation of nucleobase-containing compound metabolic process regulation of RNA biosynthetic process regulation of transcription by RNA polymerase II regulation of biosynthetic process primary metabolic process regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process metabolic process regulation of macromolecule biosynthetic process regulation of DNA-templated transcription macromolecule metabolic process regulation of metabolic process imaginal disc-derived wing morphogenesis wing disc morphogenesis imaginal disc-derived wing margin morphogenesis appendage development post-embryonic appendage morphogenesis wing disc development imaginal disc-derived appendage morphogenesis appendage morphogenesis imaginal disc-derived appendage development leg disc pattern formation leg disc development imaginal disc pattern formation positive regulation of DNA-templated transcription positive regulation of biological process positive regulation of macromolecule biosynthetic process positive regulation of metabolic process positive regulation of biosynthetic process positive regulation of macromolecule metabolic process positive regulation of cellular process positive regulation of transcription by RNA polymerase II positive regulation of RNA metabolic process positive regulation of RNA biosynthetic process larval chitin-based cuticle development chitin-based cuticle development cuticle development involved in chitin-based cuticle molting cycle cuticle development chitin-based larval cuticle pattern formation larval development cuticle pattern formation molting cycle instar larval development molting cycle, chitin-based cuticle	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol RNA polymerase II transcription regulator complex membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex transcription regulator complex intracellular membrane-bounded organelle intracellular organelle organelle beta-catenin-TCF complex cellular anatomical structure intracellular anatomical structure cytoplasm cytosol RNA polymerase II transcription regulator complex membrane-bounded organelle protein-containing complex nucleus nuclear protein-containing complex transcription regulator complex intracellular membrane-bounded organelle intracellular organelle organelle beta-catenin-TCF complex membrane-enclosed lumen intracellular organelle lumen nucleoplasm organelle lumen nuclear lumen

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
IA [auth Y], O [auth E], Y [auth O]	IPR001965	Zinc finger, PHD-type	Domain
IA [auth Y], O [auth E], Y [auth O]	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
IA [auth Y], O [auth E], Y [auth O]	IPR019787	Zinc finger, PHD-finger	Domain
IA [auth Y], O [auth E], Y [auth O]	IPR011011	Zinc finger, FYVE/PHD-type	Homologous Superfamily
IA [auth Y], O [auth E], Y [auth O]	IPR052475	Wnt Signal Transduction Protein	Family
IA [auth Y], O [auth E], Y [auth O]	IPR019786	Zinc finger, PHD-type, conserved site	Conserved Site
AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], F [auth 5], GA [auth W], H [auth 7], J [auth 9], K [auth A], M [auth C], Q [auth G], S [auth I], U [auth K], W [auth M]	IPR001965	Zinc finger, PHD-type	Domain
AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], F [auth 5], GA [auth W], H [auth 7], J [auth 9], K [auth A], M [auth C], Q [auth G], S [auth I], U [auth K], W [auth M]	IPR013083	Zinc finger, RING/FYVE/PHD-type	Homologous Superfamily
AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], F [auth 5], GA [auth W], H [auth 7], J [auth 9], K [auth A], M [auth C], Q [auth G], S [auth I], U [auth K], W [auth M]	IPR019787	Zinc finger, PHD-finger	Domain
AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], F [auth 5], GA [auth W], H [auth 7], J [auth 9], K [auth A], M [auth C], Q [auth G], S [auth I], U [auth K], W [auth M]	IPR011011	Zinc finger, FYVE/PHD-type	Homologous Superfamily
AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], F [auth 5], GA [auth W], H [auth 7], J [auth 9], K [auth A], M [auth C], Q [auth G], S [auth I], U [auth K], W [auth M]	IPR052475	Wnt Signal Transduction Protein	Family
AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], AA [auth Q], B [auth 1], CA [auth S], D [auth 3], EA [auth U], F [auth 5], GA [auth W], H [auth 7], J [auth 9], K [auth A], M [auth C], Q [auth G], S [auth I], U [auth K], W [auth M]	IPR019786	Zinc finger, PHD-type, conserved site	Conserved Site
A [auth 0], BA [auth R], C [auth 2], DA [auth T], E [auth 4], A [auth 0], BA [auth R], C [auth 2], DA [auth T], E [auth 4], FA [auth V], G [auth 6], HA [auth X], I [auth 8], JA [auth Z], L [auth B], N [auth D], P [auth F], R [auth H], T [auth J], V [auth L], X [auth N], Z [auth P]	IPR024670	B-cell lymphoma 9, beta-catenin binding domain	Domain
A [auth 0], BA [auth R], C [auth 2], DA [auth T], E [auth 4], A [auth 0], BA [auth R], C [auth 2], DA [auth T], E [auth 4], FA [auth V], G [auth 6], HA [auth X], I [auth 8], JA [auth Z], L [auth B], N [auth D], P [auth F], R [auth H], T [auth J], V [auth L], X [auth N], Z [auth P]	IPR052475	Wnt Signal Transduction Protein	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.