3ZOW

Crystal Structure of Wild Type Nitrosomonas europaea Cytochrome c552

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
A	d3zowa_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
B	d3zowb_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
C	d3zowc_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
D	d3zowd_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
E	d3zowe_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
F	d3zowf_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
G	d3zowg_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
H	d3zowh_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
I	d3zowi_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
J	d3zowj_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
K	d3zowk_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
L	d3zowl_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
M	d3zowm_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
N	d3zown_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
O	d3zowo_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
P	d3zowp_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
Q	d3zowq_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)
R	d3zowr_	All alpha proteins	Cytochrome c	Cytochrome c	monodomain cytochrome c	Cytochrome c552	(Nitrosomonas europaea ) [TaxId: 915 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
G	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
H	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
I	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
J	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
K	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
L	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
M	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
N	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
O	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
P	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
Q	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)
R	SCOP2B Superfamily	Cytochrome c	8036413	3000815	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	PF00034	e3zowA1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
B	PF00034	e3zowB1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
C	PF00034	e3zowC1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
D	PF00034	e3zowD1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
E	PF00034	e3zowE1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
F	PF00034	e3zowF1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
G	PF00034	e3zowG1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
H	PF00034	e3zowH1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
I	PF00034	e3zowI1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
J	PF00034	e3zowJ1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
K	PF00034	e3zowK1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
L	PF00034	e3zowL1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
M	PF00034	e3zowM1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
N	PF00034	e3zowN1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
O	PF00034	e3zowO1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
P	PF00034	e3zowP1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
Q	PF00034	e3zowQ1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)
R	PF00034	e3zowR1	A: alpha arrays	X: Cytochrome c-like	H: Cytochrome c (From Topology)	T: Cytochrome c	F: PF00034	ECOD (1.6)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
B	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
C	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
D	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
E	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
F	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
G	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
H	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
I	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
J	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
K	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
L	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
M	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
N	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
O	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
P	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
Q	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)
R	1.10.760.10	Mainly Alpha	Orthogonal Bundle	Cytochrome Bc1 Complex	Chain D, domain 2	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	PF00034	Cytochrome c (Cytochrom_C)	Cytochrome c	The Pfam entry does not include all Prosite members. The cytochrome 556 and cytochrome c' families are not included. All these are now in a new clan together. The C-terminus of DUF989, Pfam:PF06181, has now been merged into this family.	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	CYTOCHROME C-552	binding organic cyclic compound binding tetrapyrrole binding heme binding electron transfer activity cation binding transition metal ion binding iron ion binding ion binding metal ion binding small molecule binding	-	periplasmic space cellular anatomical entity

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR036909	Cytochrome c-like domain superfamily	Homologous Superfamily
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR009056	Cytochrome c-like domain	Domain
A, B, C, D, E A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R	IPR002324	Cytochrome c, class ID	Family

RCSB PDB Core Operations are funded by the National Science Foundation (DBI-1832184), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.