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 3WGO | pdb_00003wgo

Crystal structure of Q154L/T173I/R199M/P248S/H249/N276S mutant of meso-dapdh from Clostridium tetani E88

External Resource: Annotation


Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
BPeptidase_S8e3wgoB1 A: alpha arraysX: RuvA-CH: post-HMGL domain-likeT: post-HMGL domain-likeF: Peptidase_S8ECOD (v295.2)
APeptidase_S8e3wgoA1 A: alpha arraysX: RuvA-CH: post-HMGL domain-likeT: post-HMGL domain-likeF: Peptidase_S8ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
B3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
B3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)
A3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
A3.30.360.10 Alpha Beta 2-Layer Sandwich Dihydrodipicolinate Reductase domain 2CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B
PF16654Diaminopimelic acid dehydrogenase C-terminal domain (DAPDH_C)Diaminopimelic acid dehydrogenase C-terminal domainThis family comprises the C-terminal domain of diaminopimelic acid dehydrogenase. Diaminopimelate dehydrogenase is a NADPH-dependent enzyme that catalyzes the oxidative deamination of meso-2,6-diaminopimelate, which is the direct precursor of L-lysin ...This family comprises the C-terminal domain of diaminopimelic acid dehydrogenase. Diaminopimelate dehydrogenase is a NADPH-dependent enzyme that catalyzes the oxidative deamination of meso-2,6-diaminopimelate, which is the direct precursor of L-lysine in bacterial lysine biosynthesis.
Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B
Meso-diaminopimelate dehydrogenase - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B
IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
A, B
IPR032094Meso-diaminopimelate D-dehydrogenase, C-terminalDomain
A, B
IPR010190Diaminopimelate dehydrogenase, DdhFamily