3VR4 | pdb_00003vr4

Crystal structure of Enterococcus hirae V1-ATPase [eV1]


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Gd3vr4g_ Coiled coil proteins Antiparallel coiled-coil V-type ATPase central rotor subunit D automated matches automated matches (Enterococcus hirae ) [TaxId: 1354 ], SCOPe (2.08)
Fd3vr4f3 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Enterococcus hirae ) [TaxId: 1354 ], SCOPe (2.08)
Fd3vr4f1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Enterococcus hirae ) [TaxId: 1354 ], SCOPe (2.08)
Fd3vr4f2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases automated matches automated matches (Enterococcus hirae ) [TaxId: 1354 ], SCOPe (2.08)
Ed3vr4e3 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Enterococcus hirae ) [TaxId: 1354 ], SCOPe (2.08)
Ed3vr4e1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Enterococcus hirae ) [TaxId: 1354 ], SCOPe (2.08)
Ed3vr4e2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases automated matches automated matches (Enterococcus hirae ) [TaxId: 1354 ], SCOPe (2.08)
Dd3vr4d3 All alpha proteins Left-handed superhelix C-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Enterococcus hirae ) [TaxId: 1354 ], SCOPe (2.08)
Dd3vr4d1 All beta proteins Domain of alpha and beta subunits of F1 ATP synthase-like N-terminal domain of alpha and beta (or A/B) subunits of rotary ATPases automated matches automated matches (Enterococcus hirae ) [TaxId: 1354 ], SCOPe (2.08)
Dd3vr4d2 Alpha and beta proteins (a/b) P-loop containing nucleoside triphosphate hydrolases P-loop containing nucleoside triphosphate hydrolases automated matches automated matches (Enterococcus hirae ) [TaxId: 1354 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
CSCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8093377 3001034 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8093380 3000684 SCOP2B (2022-06-29)
CSCOP2B SuperfamilyRecA-like P-loop NTPases 8093379 3002019 SCOP2B (2022-06-29)
CSCOP2B SuperfamilySingle hybrid motif 8093375 3001880 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyATP synthase alpha/beta C-terminal domain-like 8093380 3000684 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyATP synthase alpha/beta N-terminal domain-like 8093377 3001034 SCOP2B (2022-06-29)
BSCOP2B SuperfamilySingle hybrid motif 8093375 3001880 SCOP2B (2022-06-29)
BSCOP2B SuperfamilyRecA-like P-loop NTPases 8093379 3002019 SCOP2B (2022-06-29)
ASCOP2 FamilyVatA barrel-sandwich hybrid domain-like 8046304 4004012 SCOP2 (2022-06-29)
ASCOP2 FamilyATP synthase alpha/beta N-terminal domain-like 8093376 4002275 SCOP2 (2022-06-29)
ASCOP2 FamilyATP synthase nucleotide-binding domain-like 8093378 4004011 SCOP2 (2022-06-29)
ASCOP2 SuperfamilySingle hybrid motif 8093375 3001880 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyATP synthase alpha/beta N-terminal domain-like 8093377 3001034 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyRecA-like P-loop NTPases 8093379 3002019 SCOP2 (2022-06-29)
ASCOP2 SuperfamilyATP synthase alpha/beta C-terminal domain-like 8093380 3000684 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
HGlyco_hydro_19e3vr4H1 A: alpha bundlesX: Globin-likeH: Ring-building motif I in type III secretion systemT: Ring-building motif I in type III secretion systemF: Glyco_hydro_19ECOD (develop294)
FBSH_RNDe3vr4F4 A: alpha bundlesX: Fusion glycoprotein F2H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseT: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymeraseF: BSH_RNDECOD (develop294)
EV-sete3vr4E4 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: V-setECOD (develop294)
DV-sete3vr4D4 A: alpha bundlesX: Subtilisin-likeH: Subtilisin-likeT: Subtilisin-likeF: V-setECOD (develop294)
C14-3-3e3vr4C1 A: alpha bundlesX: beta-GraspH: HTHT: winged helix domainF: 14-3-3ECOD (develop294)
CRNA_pol_Rpb1_5e3vr4C3 A: alpha bundlesX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF: RNA_pol_Rpb1_5ECOD (develop294)
BGlyco_hydro_19e3vr4B2 A: alpha bundlesX: Globin-likeH: Ring-building motif I in type III secretion systemT: Ring-building motif I in type III secretion systemF: Glyco_hydro_19ECOD (develop294)
BAAA_16e3vr4B4 A: alpha bundlesX: TIM beta/alpha-barrelH: P-loop domains-relatedT: P-loop containing nucleoside triphosphate hydrolasesF: AAA_16ECOD (develop294)
A14-3-3e3vr4A1 A: alpha bundlesX: beta-GraspH: HTHT: winged helix domainF: 14-3-3ECOD (develop294)
ARNA_pol_Rpb1_5e3vr4A3 A: alpha bundlesX: TIM beta/alpha-barrelH: TIM barrelsT: TIM barrelsF: RNA_pol_Rpb1_5ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
H3.40.50.10580 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold ATPase, V1 complex, subunit FCATH (4.3.0)
F3.40.50.12240 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold CATH (4.3.0)
E3.40.50.12240 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold CATH (4.3.0)
D3.40.50.12240 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold CATH (4.3.0)
C3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
C2.40.50.100 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domainCATH (4.3.0)
C1.10.1140.10 Mainly Alpha Orthogonal Bundle Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain Chain D, domain3CATH (4.3.0)
B3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
B2.40.50.100 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domainCATH (4.3.0)
B1.10.1140.10 Mainly Alpha Orthogonal Bundle Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain Chain D, domain3CATH (4.3.0)
A3.40.50.300 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold P-loop containing nucleotide triphosphate hydrolasesCATH (4.3.0)
A2.40.50.100 Mainly Beta Beta Barrel OB fold (Dihydrolipoamide Acetyltransferase, E2P) RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domainCATH (4.3.0)
A1.10.1140.10 Mainly Alpha Orthogonal Bundle Bovine Mitochondrial F1-ATPase, ATP Synthase Beta Chain Chain D, domain3CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
V-type sodium ATPase subunit G -
V-type sodium ATPase subunit D -
D, E, F
V-type sodium ATPase subunit B -
A, B, C
V-type sodium ATPase catalytic subunit A

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
IPR022944ATPase, V1 complex, subunit F, bacterial/archaealFamily
IPR036906ATPase, V1 complex, subunit F superfamilyHomologous Superfamily
IPR008218ATPase, V1 complex, subunit FFamily
IPR002699ATPase, V1 complex, subunit DFamily
D, E, F
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
D, E, F
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
D, E, F
IPR055190ATP synthase A/B type, C-terminal domainDomain
D, E, F
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
D, E, F
IPR022879V-type ATP synthase regulatory subunit B/betaFamily
D, E, F
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily
A, B, C
IPR004100ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domainDomain
A, B, C
IPR022878V-type ATP synthase catalytic alpha chainFamily
A, B, C
IPR024034ATPase, F1/V1 complex, beta/alpha subunit, C-terminalHomologous Superfamily
A, B, C
IPR036121ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamilyHomologous Superfamily
A, B, C
IPR031686ATPsynthase alpha/beta subunit, barrel-sandwich domainDomain
A, B, C
IPR023366ATP synthase subunit alpha, N-terminal domain-like superfamilyHomologous Superfamily
A, B, C
IPR020003ATPase, alpha/beta subunit, nucleotide-binding domain, active siteActive Site
A, B, C
IPR000194ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domainDomain
A, B, C
IPR055190ATP synthase A/B type, C-terminal domainDomain
A, B, C
IPR027417P-loop containing nucleoside triphosphate hydrolaseHomologous Superfamily