3VMG | pdb_00003vmg

Reduced carbazole-bound complex between oxygenase and ferredoxin in carbazole 1,9a-dioxygenase

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
A	SCOP2B Superfamily	ISP domain	8039674	3000233	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Bet v1-like	8039675	3000738	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	ISP domain	8039674	3000233	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Bet v1-like	8039675	3000738	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Bet v1-like	8039675	3000738	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	ISP domain	8039674	3000233	SCOP2B (2022-06-29)
E	SCOP2B Superfamily	ISP domain	8080536	3000233	SCOP2B (2022-06-29)
F	SCOP2B Superfamily	ISP domain	8080536	3000233	SCOP2B (2022-06-29)
D	SCOP2B Superfamily	ISP domain	8080536	3000233	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
A	Pkinase	e3vmgA2	A: alpha bundles	X: Flavodoxin-like	H: SH3	T: SH3	F: Pkinase	ECOD (develop294)
A	Pyridoxal_deC	e3vmgA4	A: alpha bundles	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Pyridoxal_deC	ECOD (develop294)
C	V-set	e3vmgC2	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (develop294)
C	Pyridoxal_deC	e3vmgC6	A: alpha bundles	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Pyridoxal_deC	ECOD (develop294)
B	V-set	e3vmgB2	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (develop294)
B	Pyridoxal_deC	e3vmgB6	A: alpha bundles	X: Subtilisin-like	H: Subtilisin-like	T: Subtilisin-like	F: Pyridoxal_deC	ECOD (develop294)
E	V-set	e3vmgE2	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (develop294)
F	V-set	e3vmgF2	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: V-set	ECOD (develop294)
D	Pkinase	e3vmgD2	A: alpha bundles	X: Flavodoxin-like	H: SH3	T: SH3	F: Pkinase	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	3.90.380.10	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit	Chain A, domain 1	CATH (4.3.0)
A	2.20.25.680	Mainly Beta	Single Sheet	N-terminal domain of TfIIb		CATH (4.3.0)
A	2.20.25.10	Mainly Beta	Single Sheet	N-terminal domain of TfIIb		CATH (4.3.0)
C	3.90.380.10	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit	Chain A, domain 1	CATH (4.3.0)
C	2.20.25.680	Mainly Beta	Single Sheet	N-terminal domain of TfIIb		CATH (4.3.0)
C	2.20.25.10	Mainly Beta	Single Sheet	N-terminal domain of TfIIb		CATH (4.3.0)
B	3.90.380.10	Alpha Beta	Alpha-Beta Complex	Naphthalene 1,2-dioxygenase Alpha Subunit	Chain A, domain 1	CATH (4.3.0)
B	2.20.25.680	Mainly Beta	Single Sheet	N-terminal domain of TfIIb		CATH (4.3.0)
B	2.20.25.10	Mainly Beta	Single Sheet	N-terminal domain of TfIIb		CATH (4.3.0)
E	2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	CATH (4.3.0)
F	2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	CATH (4.3.0)
D	2.102.10.10	Mainly Beta	3-layer Sandwich	Rieske Iron-sulfur Protein	Rieske [2Fe-2S] iron-sulphur domain	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C	Terminal oxygenase component of carbazole	oxidoreductase activity catalytic activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	-	-
D, E, F	Ferredoxin component of carbazole	oxidoreductase activity oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor oxidoreductase activity, acting on hydrogen as donor ferredoxin hydrogenase activity catalytic activity dioxygenase activity iron-sulfur cluster binding 2 iron, 2 sulfur cluster binding binding metal cluster binding small molecule binding cation binding ion binding metal ion binding	cellular response to stimulus catabolic process response to stimulus cellular response to xenobiotic stimulus carbazole catabolic process xenobiotic catabolic process xenobiotic metabolic process response to xenobiotic stimulus cellular response to chemical stimulus response to chemical metabolic process cellular process	-

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C	IPR017941	Rieske [2Fe-2S] iron-sulphur domain	Domain
A, B, C	IPR050584	Cholesterol 7-desaturase	Family
A, B, C	IPR036922	Rieske [2Fe-2S] iron-sulphur domain superfamily	Homologous Superfamily
A, B, C	IPR021028	Homotrimeric ring hydroxylase, catalytic domain	Domain
D, E, F	IPR017941	Rieske [2Fe-2S] iron-sulphur domain	Domain
D, E, F	IPR036922	Rieske [2Fe-2S] iron-sulphur domain superfamily	Homologous Superfamily

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.