3V42 | pdb_00003v42

Crystal structure of renal tumor suppressor protein, folliculin

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
B	SCOP2 Family	Folliculin, C-terminal domain-like	8045995	4004810	SCOP2 (2022-06-29)
B	SCOP2 Superfamily	Folliculin C-terminal domain-like	8055792	3002313	SCOP2 (2022-06-29)
A	SCOP2B Superfamily	Folliculin C-terminal domain-like	8055792	3002313	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
B	Rrf2	e3v42B1	A: alpha bundles	X: beta-Grasp	H: HTH	T: winged helix domain	F: Rrf2	ECOD (develop294)
A	Folliculin_C	e3v42A1	A: alpha bundles	X: Profilin-like	H: sensor domains	T: sensor domains	F: Folliculin_C	ECOD (develop294)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
B	3.40.50.12430	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
B	1.10.10.1730	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Folliculin	CATH (4.3.0)
A	3.40.50.12430	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold		CATH (4.3.0)
A	1.10.10.1730	Mainly Alpha	Orthogonal Bundle	Arc Repressor Mutant, subunit A	Folliculin	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B	PF16692	Folliculin C-terminal domain (Folliculin_C)	Folliculin C-terminal domain	This is the C-terminal domain of folliculin. It has guanine nucleotide exchange factor (GEF) activity [1].	Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B	Folliculin	GTPase regulator activity enzyme regulator activity enzyme activator activity GTPase activator activity molecular function activator activity nucleoside-triphosphatase regulator activity molecular function regulator activity protein-containing complex binding binding molecular function inhibitor activity enzyme inhibitor activity protein binding enzyme binding	developmental process multicellular organismal process negative regulation of cell population proliferation regulation of biological process cell population proliferation regulation of cellular process biological regulation negative regulation of biological process animal organ development cell proliferation involved in kidney development renal system development negative regulation of cell proliferation involved in kidney development multicellular organism development regulation of cell population proliferation negative regulation of cellular process developmental process multicellular organismal process negative regulation of cell population proliferation regulation of biological process cell population proliferation regulation of cellular process biological regulation negative regulation of biological process animal organ development cell proliferation involved in kidney development renal system development negative regulation of cell proliferation involved in kidney development multicellular organism development regulation of cell population proliferation negative regulation of cellular process anatomical structure development cellular process kidney development system development cellular response to stimulus positive regulation of cell communication positive regulation of signal transduction response to stimulus signaling positive regulation of biological process regulation of signal transduction intracellular signal transduction cell communication positive regulation of response to stimulus regulation of intracellular signal transduction positive regulation of TOR signaling signal transduction positive regulation of cellular process TOR signaling regulation of signaling regulation of TOR signaling positive regulation of intracellular signal transduction regulation of response to stimulus regulation of cell communication positive regulation of signaling ribonucleotide catabolic process pyridine nucleotide catabolic process aerobic respiration negative regulation of small molecule metabolic process negative regulation of glycolytic process oxoacid metabolic process carbohydrate catabolic process organophosphate catabolic process carbohydrate derivative metabolic process regulation of generation of precursor metabolites and energy nucleoside phosphate catabolic process organic acid metabolic process negative regulation of ATP metabolic process regulation of primary metabolic process regulation of ATP metabolic process nucleobase-containing compound metabolic process regulation of purine nucleotide catabolic process negative regulation of nucleotide metabolic process regulation of small molecule metabolic process glycolytic process regulation of nucleotide metabolic process phosphate-containing compound metabolic process pyridine-containing compound metabolic process small molecule metabolic process negative regulation of nucleobase-containing compound metabolic process regulation of nucleobase-containing compound metabolic process purine ribonucleotide catabolic process phosphorus metabolic process negative regulation of carbohydrate metabolic process nucleoside phosphate metabolic process nicotinamide nucleotide metabolic process pyruvate metabolic process regulation of carbohydrate catabolic process negative regulation of metabolic process negative regulation of purine nucleotide catabolic process purine nucleoside diphosphate metabolic process primary metabolic process purine-containing compound catabolic process nucleotide metabolic process regulation of purine nucleotide metabolic process nucleobase-containing compound catabolic process nucleoside diphosphate metabolic process purine nucleoside diphosphate catabolic process nucleoside diphosphate catabolic process regulation of nucleotide catabolic process metabolic process regulation of phosphorus metabolic process nucleoside triphosphate metabolic process monocarboxylic acid metabolic process purine ribonucleotide metabolic process regulation of metabolic process pyridine-containing compound catabolic process ribose phosphate metabolic process cellular respiration catabolic process ATP metabolic process negative regulation of purine nucleotide metabolic process energy derivation by oxidation of organic compounds negative regulation of phosphate metabolic process purine nucleotide metabolic process ribonucleotide metabolic process nucleobase-containing small molecule metabolic process purine ribonucleoside triphosphate metabolic process ribonucleoside diphosphate metabolic process ribonucleoside diphosphate catabolic process regulation of carbohydrate metabolic process nucleotide catabolic process negative regulation of nucleotide catabolic process negative regulation of catabolic process purine nucleoside triphosphate metabolic process purine nucleotide catabolic process carbohydrate metabolic process carbohydrate derivative catabolic process ADP catabolic process carboxylic acid metabolic process regulation of catabolic process generation of precursor metabolites and energy regulation of glycolytic process purine-containing compound metabolic process ADP metabolic process organophosphate metabolic process negative regulation of phosphorus metabolic process purine ribonucleoside diphosphate metabolic process purine ribonucleoside diphosphate catabolic process positive regulation of programmed cell death regulation of apoptotic process regulation of programmed cell death cell death positive regulation of apoptotic process apoptotic process programmed cell death cellular developmental process hemopoiesis cell differentiation cell development negative regulation of signaling negative regulation of intracellular signal transduction negative regulation of cell communication intracellular signaling cassette negative regulation of response to stimulus regulation of MAPK cascade negative regulation of signal transduction negative regulation of ERK1 and ERK2 cascade MAPK cascade ERK1 and ERK2 cascade regulation of ERK1 and ERK2 cascade negative regulation of MAPK cascade small GTPase-mediated signal transduction regulation of small GTPase mediated signal transduction Ras protein signal transduction regulation of Ras protein signal transduction cellular component organization cellular component biogenesis cell junction organization cellular component assembly cell junction assembly cellular component organization or biogenesis cell-cell junction assembly cell-cell junction organization embryo development ending in birth or egg hatching chordate embryonic development embryo development in utero embryonic development cellular response to nutrient levels response to nutrient levels cellular response to stress response to stress response to starvation cellular response to starvation negative regulation of TOR signaling regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction negative regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction phosphatidylinositol 3-kinase/protein kinase B signal transduction regulation of intrinsic apoptotic signaling pathway positive regulation of apoptotic signaling pathway intrinsic apoptotic signaling pathway apoptotic signaling pathway positive regulation of intrinsic apoptotic signaling pathway regulation of apoptotic signaling pathway regulation of pro-B cell differentiation regulation of developmental process regulation of cell differentiation regulation of lymphoid progenitor cell differentiation pro-B cell differentiation lymphoid progenitor cell differentiation regulation of hematopoietic progenitor cell differentiation hematopoietic progenitor cell differentiation RNA metabolic process negative regulation of RNA biosynthetic process RNA biosynthetic process DNA-templated transcription nucleic acid biosynthetic process regulation of RNA metabolic process transcription by RNA polymerase II regulation of RNA biosynthetic process negative regulation of macromolecule metabolic process regulation of biosynthetic process regulation of transcription by RNA polymerase II negative regulation of DNA-templated transcription negative regulation of transcription by RNA polymerase II regulation of macromolecule metabolic process nucleobase-containing compound biosynthetic process gene expression macromolecule biosynthetic process nucleic acid metabolic process regulation of gene expression biosynthetic process negative regulation of biosynthetic process negative regulation of macromolecule biosynthetic process regulation of macromolecule biosynthetic process macromolecule metabolic process regulation of DNA-templated transcription negative regulation of RNA metabolic process cellular response to amino acid starvation response to amino acid starvation regulation of epithelial cell proliferation epithelial cell proliferation negative regulation of epithelial cell proliferation positive regulation of autophagy autophagy regulation of autophagy positive regulation of catabolic process positive regulation of metabolic process process utilizing autophagic mechanism cellular response to growth factor stimulus cell surface receptor protein serine/threonine kinase signaling pathway cell surface receptor signaling pathway cellular response to transforming growth factor beta stimulus response to endogenous stimulus cellular response to endogenous stimulus response to transforming growth factor beta transforming growth factor beta receptor signaling pathway response to growth factor transforming growth factor beta receptor superfamily signaling pathway enzyme-linked receptor protein signaling pathway negative regulation of lysosome organization regulation of cellular component organization vacuole organization negative regulation of cellular component organization lytic vacuole organization regulation of vacuole organization regulation of organelle organization lysosome organization organelle organization negative regulation of organelle organization regulation of lysosome organization negative regulation of post-translational protein modification regulation of protein modification process negative regulation of protein modification process protein metabolic process protein modification process negative regulation of protein metabolic process regulation of post-translational protein modification regulation of protein metabolic process macromolecule modification post-translational protein modification regulation of transmembrane receptor protein serine/threonine kinase signaling pathway regulation of transforming growth factor beta receptor signaling pathway regulation of cellular response to transforming growth factor beta stimulus positive regulation of transforming growth factor beta receptor signaling pathway regulation of cellular response to growth factor stimulus positive regulation of transmembrane receptor protein serine/threonine kinase signaling pathway positive regulation of cellular response to transforming growth factor beta stimulus localization organelle localization lysosome localization vacuolar localization multicellular organismal-level homeostasis homeostatic process energy homeostasis positive regulation of TORC1 signaling regulation of TORC1 signaling TORC1 signaling negative regulation of Rho protein signal transduction Rho protein signal transduction negative regulation of small GTPase mediated signal transduction regulation of Rho protein signal transduction fat cell differentiation negative regulation of developmental process negative regulation of fat cell differentiation regulation of brown fat cell differentiation brown fat cell differentiation negative regulation of brown fat cell differentiation negative regulation of cell differentiation regulation of fat cell differentiation negative regulation of cold-induced thermogenesis adaptive thermogenesis regulation of cold-induced thermogenesis cold-induced thermogenesis temperature homeostasis regulation of multicellular organismal process negative regulation of multicellular organismal process	cellular anatomical structure intracellular anatomical structure cytoplasm cytosol vacuolar membrane membrane-bounded organelle membrane lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle organelle cellular anatomical structure intracellular anatomical structure cytoplasm cytosol vacuolar membrane membrane-bounded organelle membrane lytic vacuole vacuole intracellular membrane-bounded organelle intracellular organelle lytic vacuole membrane bounding membrane of organelle organelle lysosomal membrane organelle membrane lysosome cell projection cilium plasma membrane bounded cell projection GTPase activator complex protein-containing complex FNIP-folliculin RagC/D GAP enzyme activator complex centrosome microtubule organizing center cytoskeleton membraneless organelle intracellular membraneless organelle microtubule cytoskeleton cell periphery plasma membrane mitotic spindle spindle nucleus

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B	IPR021713	Folliculin	Family
A, B	IPR037520	Folliculin/SMCR8, longin domain	Domain
A, B	IPR032035	Folliculin, DENN domain	Domain
A, B	IPR044886	Folliculin, DENN domain, C-terminal superfamily	Homologous Superfamily
A, B	IPR037521	Folliculin/SMCR8, tripartite DENN domain	Domain

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
A, B	Pharos: Q8NFG4	Birt-Hogg-Dube syndrome familial spontaneous pneumothorax renal cell carcinoma pneumothorax colorectal cancer kidney oncocytoma chromophobe renal cell carcinoma nonpapillary renal cell carcinoma clear cell renal carcinoma Potocki-Lupski syndrome renal carcinoma liver cancer papillary renal cell carcinoma collecting duct carcinoma hamartoma Birt-Hogg-Dube syndrome familial spontaneous pneumothorax renal cell carcinoma pneumothorax colorectal cancer kidney oncocytoma chromophobe renal cell carcinoma nonpapillary renal cell carcinoma clear cell renal carcinoma Potocki-Lupski syndrome renal carcinoma liver cancer papillary renal cell carcinoma collecting duct carcinoma hamartoma sarcomatoid renal cell carcinoma hereditary clear cell renal cell carcinoma large cell medulloblastoma malignant ependymoma Malignant neoplasm of kidney Alzheimer disease osteosarcoma pilocytic astrocytoma glioblastoma kidney neoplasm malignant glioma medulloblastoma astrocytic tumor oligodendroglioma cancer pituitary cancer primitive neuroectodermal tumor colorectal carcinoma Ehlers-Danlos syndrome liver neoplasm malignant mesothelioma atypical teratoid rhabdoid tumor oncocytic adenoma Pick disease colorectal adenocarcinoma progressive supranuclear palsy

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.