3T35 | pdb_00003t35

Arabidopsis thaliana dynamin-related protein 1A in postfission state

External Resource: Annotation

Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Ras-like P-loop GTPases	8054362	3002022	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Ras-like P-loop GTPases	8054362	3002022	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Ras-like P-loop GTPases	8054362	3002022	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Ras-like P-loop GTPases	8054362	3002022	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	Vps4_C,AAA_lid_3	e3t35D2	A: a/b three-layered sandwiches	X: Fusion glycoprotein F2	H: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	T: MoeA-I/Ornithine decarboxylase-C/Reverse ferredoxin-like domain in RNA-polymerase	F: Vps4_C,AAA_lid_3	ECOD (v294.1)
C	ABC_tran	e3t35C1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: ABC_tran	ECOD (v294.1)
B	ABC_tran	e3t35B1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: ABC_tran	ECOD (v294.1)
A	ABC_tran	e3t35A1	A: a/b three-layered sandwiches	X: beta-Grasp	H: HTH	T: winged helix domain	F: ABC_tran	ECOD (v294.1)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
C	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
B	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)
A	3.40.50.300	Alpha Beta	3-Layer(aba) Sandwich	Rossmann fold	P-loop containing nucleotide triphosphate hydrolases	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A, B, C, D	PF01031	Dynamin central region (Dynamin_M)	Dynamin central region	-	Family
A, B, C, D	PF00350	Dynamin family (Dynamin_N)	Dynamin family		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Dynamin-related protein 1A, LINKER, Dynamin-related protein 1A	clathrin binding protein binding binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding clathrin binding protein binding binding guanyl nucleotide binding GTP binding nucleotide binding guanyl ribonucleotide binding purine ribonucleotide binding purine ribonucleoside triphosphate binding nucleoside phosphate binding ion binding purine nucleotide binding anion binding heterocyclic compound binding carbohydrate derivative binding ribonucleotide binding small molecule binding cytoskeletal protein binding microtubule binding tubulin binding protein histidine kinase binding kinase binding enzyme binding protein kinase binding pyrophosphatase activity GTPase activity ribonucleoside triphosphate phosphatase activity hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides hydrolase activity hydrolase activity, acting on acid anhydrides catalytic activity	developmental process multicellular organism development multicellular organismal process xylem and phloem pattern formation anatomical structure development pattern specification process regionalization cellular response to stimulus cellular response to nutrient levels response to nutrient levels cellular response to chemical stimulus response to stimulus response to boron-containing substance cellular response to boron-containing substance levels developmental process multicellular organism development multicellular organismal process xylem and phloem pattern formation anatomical structure development pattern specification process regionalization cellular response to stimulus cellular response to nutrient levels response to nutrient levels cellular response to chemical stimulus response to stimulus response to boron-containing substance cellular response to boron-containing substance levels response to chemical cellular process regulation of cytoskeleton organization regulation of biological process regulation of phragmoplast microtubule organization regulation of cellular component organization regulation of cellular process microtubule cytoskeleton organization biological regulation regulation of microtubule-based process regulation of organelle organization cellular component organization organelle organization microtubule-based process cellular component organization or biogenesis phragmoplast microtubule organization regulation of microtubule cytoskeleton organization cytoskeleton organization cytokinesis by cell plate formation cytokinesis cell division cell cycle cell cycle process regulation of localization import into cell regulation of transport transport regulation of vesicle-mediated transport establishment of localization vesicle-mediated transport localization endocytosis regulation of endocytosis clathrin-dependent endocytosis receptor-mediated endocytosis plant epidermis morphogenesis cellular developmental process plant epidermis development trichome morphogenesis tissue development cell morphogenesis anatomical structure morphogenesis trichome differentiation cell differentiation trichome branching cytoskeleton-dependent cytokinesis plant-type cell wall organization or biogenesis cell wall organization or biogenesis cell plate assembly mitotic cell cycle cellular component biogenesis cellular component assembly mitotic nuclear division organelle fission plant-type cell wall biogenesis nuclear division mitotic cell cycle process cell wall biogenesis cell plate formation involved in plant-type cell wall biogenesis cellular localization establishment of protein localization intracellular transport protein transport establishment of localization in cell macromolecule localization intracellular protein localization intracellular protein transport reproductive system development reproductive process embryo development developmental process involved in reproduction fruit development embryo development ending in seed dormancy seed development reproductive structure development post-embryonic development system development regulation of cell wall organization or biogenesis regulation of plant-type cell wall organization or biogenesis regulation of lipid localization lipid localization plant organ development floral whorl development stigma development flower development reproductive shoot system development carpel development gynoecium development shoot system development phyllome development floral organ development plant epidermal cell differentiation cell development cell maturation root development trichoblast differentiation root morphogenesis root epidermal cell differentiation root hair cell differentiation developmental maturation plant organ morphogenesis trichoblast maturation anatomical structure maturation root hair initiation root system development regulation of establishment of cell polarity regulation of establishment or maintenance of cell polarity establishment of cell polarity establishment or maintenance of cell polarity	cellular anatomical structure intracellular anatomical structure phragmoplast cytoplasm cell periphery cell cortex membrane-bounded organelle intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle clathrin-coated vesicle coated vesicle cellular anatomical structure intracellular anatomical structure phragmoplast cytoplasm cell periphery cell cortex membrane-bounded organelle intracellular vesicle intracellular membrane-bounded organelle intracellular organelle cytoplasmic vesicle organelle clathrin-coated vesicle coated vesicle vesicle plasma membrane membrane plant-type vacuole vacuole cell plate chloroplast thylakoid membrane plastid membrane plastid organelle outer membrane plastid thylakoid membrane plastid thylakoid organelle envelope bounding membrane of organelle membraneless organelle plastid envelope thylakoid chloroplast intracellular membraneless organelle thylakoid membrane chloroplast thylakoid outer membrane photosynthetic membrane organelle membrane cytoskeleton cell-cell junction symplast anchoring junction cell junction plasmodesma clathrin-coated endocytic vesicle endocytic vesicle polymeric cytoskeletal fiber supramolecular fiber microtubule supramolecular polymer supramolecular complex microtubule cytoskeleton

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR020850	GTPase effector domain	Domain
A, B, C, D	IPR001401	Dynamin, GTPase domain	Domain
A, B, C, D	IPR045063	Dynamin, N-terminal	Domain
A, B, C, D	IPR030381	Dynamin-type guanine nucleotide-binding (G) domain	Domain
A, B, C, D	IPR019762	Dynamin, GTPase region, conserved site	Conserved Site
A, B, C, D	IPR027417	P-loop containing nucleoside triphosphate hydrolase	Homologous Superfamily
A, B, C, D	IPR003130	Dynamin GTPase effector	Domain
A, B, C, D	IPR000375	Dynamin stalk domain	Domain
A, B, C, D	IPR022812	Dynamin	Family

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.