3S9C | pdb_00003s9c

Russell's viper venom serine proteinase, RVV-V in complex with the fragment (residues 1533-1546) of human factor V

External Resource: Annotation

Domain Annotation: CATH
Protein Family Annotation
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification
Pharos: Disease Associations

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
A	2.40.10.10	Mainly Beta	Beta Barrel	Thrombin, subunit H	Trypsin-like serine proteases	CATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

Chains	Accession	Name	Description	Comments	Source
A	PF00089	Trypsin (Trypsin)	Trypsin		Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A	Vipera russelli proteinase RVV-V gamma	peptidase activity catalytic activity, acting on a protein serine hydrolase activity serine-type peptidase activity hydrolase activity serine-type endopeptidase activity catalytic activity endopeptidase activity toxin activity	proteolysis metabolic process cellular process primary metabolic process protein metabolic process macromolecule metabolic process	membrane-bounded organelle intracellular anatomical structure intracellular vesicle intracellular membrane-bounded organelle endomembrane system intracellular organelle cellular anatomical structure cytoplasmic vesicle organelle secretory granule secretory vesicle cytoplasm vesicle extracellular region
B	Coagulation factor V	cation binding transition metal ion binding copper ion binding ion binding binding metal ion binding small molecule binding	multicellular organismal process regulation of body fluid levels wound healing response to stimulus hemostasis biological regulation blood coagulation response to stress coagulation regulation of biological quality response to wounding response to nutrient levels response to ketone response to chemical multicellular organismal process regulation of body fluid levels wound healing response to stimulus hemostasis biological regulation blood coagulation response to stress coagulation regulation of biological quality response to wounding response to nutrient levels response to ketone response to chemical response to nutrient response to oxygen-containing compound response to vitamin K response to vitamin system process circulatory system process blood circulation	cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle organelle lumen organelle endoplasmic reticulum cytoplasm cellular anatomical structure membrane membrane-bounded organelle intracellular anatomical structure membrane-enclosed lumen intracellular membrane-bounded organelle endomembrane system intracellular organelle lumen endoplasmic reticulum lumen intracellular organelle organelle lumen organelle endoplasmic reticulum cytoplasm extracellular region intracellular vesicle cytoplasmic vesicle secretory granule secretory vesicle platelet alpha granule vesicle bounding membrane of organelle endoplasmic reticulum-Golgi intermediate compartment membrane endoplasmic reticulum-Golgi intermediate compartment organelle membrane extracellular vesicle extracellular organelle extracellular membrane-bounded organelle vesicle lumen cytoplasmic vesicle lumen secretory granule lumen platelet alpha granule lumen cell periphery plasma membrane COPII-coated ER to Golgi transport vesicle coated vesicle extracellular space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A	IPR001254	Serine proteases, trypsin domain	Domain
A	IPR009003	Peptidase S1, PA clan	Homologous Superfamily
A	IPR043504	Peptidase S1, PA clan, chymotrypsin-like fold	Homologous Superfamily
A	IPR018114	Serine proteases, trypsin family, histidine active site	Active Site
A	IPR001314	Peptidase S1A, chymotrypsin family	Family
A	IPR033116	Serine proteases, trypsin family, serine active site	Active Site
B	IPR033138	Multicopper oxidases, conserved site	Conserved Site
B	IPR008979	Galactose-binding-like domain superfamily	Homologous Superfamily
B	IPR011707	Multicopper oxidase-like, N-terminal	Domain
B	IPR024715	Coagulation factor 5/8-like	Family
B	IPR000421	Coagulation factor 5/8, C-terminal domain	Domain
B	IPR008972	Cupredoxin	Homologous Superfamily
B	IPR050633	Neuropilin/Multicopper Oxidase/Coagulation Factor	Family

Pharos: Disease Associations Pharos Homepage Annotation

Chains	Drug Target	Associated Disease
B	Pharos: P12259	congenital factor V deficiency retinal vein occlusion thrombophilia due to activated protein C resistance pregnancy loss, recurrent, susceptibility to, 1 hepatic vein thrombosis sagittal sinus thrombosis Budd-Chiari syndrome Venous Thrombosis myocardial infarction cirrhosis of liver thrombophilia brain ischemia classic familial adenomatous polyposis malignant colon neoplasm thrombotic disease congenital factor V deficiency retinal vein occlusion thrombophilia due to activated protein C resistance pregnancy loss, recurrent, susceptibility to, 1 hepatic vein thrombosis sagittal sinus thrombosis Budd-Chiari syndrome Venous Thrombosis myocardial infarction cirrhosis of liver thrombophilia brain ischemia classic familial adenomatous polyposis malignant colon neoplasm thrombotic disease cerebral infarction venous thromboembolism pancreatic intraductal papillary-mucinous carcinoma peripheral arterial disease East Texas bleeding disorder factor V deficiency acne astrocytic tumor blood coagulation disease MALT lymphoma tuberculosis cerebrovascular disorder ovarian cancer colonic neoplasm pancreatic intraductal papillary-mucinous neoplasm cystic fibrosis Pick disease esophageal adenocarcinoma rheumatoid arthritis inflammatory bowel disease lung cancer Barrett esophagus malignant ependymoma ulcerative colitis oligodendroglioma pancreatic ductal adenocarcinoma colorectal cancer pancreatic intraductal papillary-mucinous neoplasm with low grade dysplasia pituitary cancer exocrine pancreatic carcinoma genetic intestinal polyposis intellectual disability sinusitis lung carcinoma benign colon neoplasm malignant pancreatic neoplasm osteosarcoma

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.