Annotations: 3RYM

Structure of Oxidized M98K mutant of Amicyanin

External Resource: Annotation

Domain Annotation: SCOP/SCOPe Classification
Domain Annotation: SCOP2 Classification
Domain Annotation: ECOD Classification
Domain Annotation: CATH
Gene Ontology: Gene Product Annotation
InterPro: Protein Family Classification

Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

Chains	Domain Info	Class	Fold	Superfamily	Family	Domain	Species	Provenance Source (Version)
D	d3rymd_	All beta proteins	Cupredoxin-like	Cupredoxins	Plastocyanin/azurin-like	Amicyanin	(Paracoccus denitrificans ) [TaxId: 266 ],	SCOPe (2.08)
C	d3rymc_	All beta proteins	Cupredoxin-like	Cupredoxins	Plastocyanin/azurin-like	Amicyanin	(Paracoccus denitrificans ) [TaxId: 266 ],	SCOPe (2.08)
B	d3rymb_	All beta proteins	Cupredoxin-like	Cupredoxins	Plastocyanin/azurin-like	Amicyanin	(Paracoccus denitrificans ) [TaxId: 266 ],	SCOPe (2.08)
A	d3ryma_	All beta proteins	Cupredoxin-like	Cupredoxins	Plastocyanin/azurin-like	Amicyanin	(Paracoccus denitrificans ) [TaxId: 266 ],	SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

Chains	Type	Family Name	Domain Identifier	Family Identifier	Provenance Source (Version)
D	SCOP2B Superfamily	Cupredoxins	8035199	3000886	SCOP2B (2022-06-29)
C	SCOP2B Superfamily	Cupredoxins	8035199	3000886	SCOP2B (2022-06-29)
B	SCOP2B Superfamily	Cupredoxins	8035199	3000886	SCOP2B (2022-06-29)
A	SCOP2B Superfamily	Cupredoxins	8035199	3000886	SCOP2B (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

Chains	Family Name	Domain Identifier	Architecture	Possible Homology	Homology	Topology	Family	Provenance Source (Version)
D	PK_Tyr_Ser-Thr	e3rymD1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: PK_Tyr_Ser-Thr	ECOD (v295.2)
C	PK_Tyr_Ser-Thr	e3rymC1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: PK_Tyr_Ser-Thr	ECOD (v295.2)
B	PK_Tyr_Ser-Thr	e3rymB1	A: alpha arrays	X: Alpha-beta plaits	H: Phage tail protein-like	T: Transmembrane protein 14A	F: PK_Tyr_Ser-Thr	ECOD (v295.2)
A	Defensin_1	e3rymA1	A: alpha arrays	X: Alpha-beta plaits	H: Defensin-related	T: Defensin-related	F: Defensin_1	ECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

Chain	Domain	Class	Architecture	Topology	Homology	Provenance Source (Version)
D	2.60.40.420	Mainly Beta	Sandwich	Immunoglobulin-like	Cupredoxins - blue copper proteins	CATH (4.3.0)
C	2.60.40.420	Mainly Beta	Sandwich	Immunoglobulin-like	Cupredoxins - blue copper proteins	CATH (4.3.0)
B	2.60.40.420	Mainly Beta	Sandwich	Immunoglobulin-like	Cupredoxins - blue copper proteins	CATH (4.3.0)
A	2.60.40.420	Mainly Beta	Sandwich	Immunoglobulin-like	Cupredoxins - blue copper proteins	CATH (4.3.0)

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

Chains	Polymer	Molecular Function	Biological Process	Cellular Component
A, B, C, D	Amicyanin	cation binding transition metal ion binding copper ion binding ion binding binding metal ion binding small molecule binding electron transfer activity	-	cellular anatomical structure extracellular region periplasmic space

InterPro: Protein Family Classification InterPro Database Homepage

Chains	Accession	Name	Type
A, B, C, D	IPR035668	Amicyanin	Family
A, B, C, D	IPR052721	Electron Transfer Amicyanin	Family
A, B, C, D	IPR002386	Amicyanin/Pseudoazurin	Family
A, B, C, D	IPR013475	Amicyanin, Paracoccus/Methylobacterium	Family
A, B, C, D	IPR000923	Blue (type 1) copper domain	Domain
A, B, C, D	IPR028871	Blue (type 1) copper protein, binding site	Binding Site
A, B, C, D	IPR008972	Cupredoxin	Homologous Superfamily
A, B, C, D	IPR001235	Blue (type 1) copper protein, plastocyanin-type	Family

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