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 3R3S | pdb_00003r3s

Structure of the YghA Oxidoreductase from Salmonella enterica

External Resource: Annotation


Domain Annotation: SCOP/SCOPe Classification SCOP-e Database Homepage

ChainsDomain InfoClassFoldSuperfamilyFamilyDomainSpeciesProvenance Source (Version)
Dd3r3sd_ Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ], SCOPe (2.08)
Cd3r3sc_ Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ], SCOPe (2.08)
Bd3r3sb_ Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ], SCOPe (2.08)
Ad3r3sa_ Alpha and beta proteins (a/b) NAD(P)-binding Rossmann-fold domains NAD(P)-binding Rossmann-fold domains automated matches automated matches (Salmonella enterica subsp. enterica serovar Typhimurium ) [TaxId: 90371 ], SCOPe (2.08)

Domain Annotation: SCOP2 Classification SCOP2 Database Homepage

ChainsTypeFamily Name Domain Identifier Family IdentifierProvenance Source (Version)
DSCOP2B SuperfamilySDR-like 8063168 3000038 SCOP2B (2022-06-29)
CSCOP2B SuperfamilySDR-like 8063168 3000038 SCOP2B (2022-06-29)
BSCOP2B SuperfamilySDR-like 8063168 3000038 SCOP2B (2022-06-29)
ASCOP2 FamilyShort-chain dehydrogenases/reductases, SDR 8063167 4000029 SCOP2 (2022-06-29)
ASCOP2 SuperfamilySDR-like 8063168 3000038 SCOP2 (2022-06-29)

Domain Annotation: ECOD Classification ECOD Database Homepage

ChainsFamily NameDomain Identifier ArchitecturePossible HomologyHomologyTopologyFamilyProvenance Source (Version)
DPDZe3r3sD1 A: alpha arraysX: Alpha-beta plaitsH: Phage tail protein-likeT: Transmembrane protein 14AF: PDZECOD (v295.2)
CPDZe3r3sC1 A: alpha arraysX: Alpha-beta plaitsH: Phage tail protein-likeT: Transmembrane protein 14AF: PDZECOD (v295.2)
BPDZe3r3sB1 A: alpha arraysX: Alpha-beta plaitsH: Phage tail protein-likeT: Transmembrane protein 14AF: PDZECOD (v295.2)
AIsochorismatasee3r3sA1 A: alpha arraysX: Acyl-CoA binding protein-likeH: Acyl-CoA binding protein-likeT: Acyl-CoA binding protein-likeF: IsochorismataseECOD (v295.2)

Domain Annotation: CATH CATH Database Homepage

ChainDomainClassArchitectureTopologyHomologyProvenance Source (Version)
D3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
C3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
B3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)
A3.40.50.720 Alpha Beta 3-Layer(aba) Sandwich Rossmann fold NAD(P)-binding Rossmann-like DomainCATH (4.3.0)

Protein Family Annotation Pfam Database Homepage

ChainsAccessionNameDescriptionCommentsSource
A, B, C, D
PF13561Enoyl-(Acyl carrier protein) reductase (adh_short_C2)Enoyl-(Acyl carrier protein) reductaseThis domain is found in Enoyl-(Acyl carrier protein) reductases. Domain

Gene Ontology: Gene Product Annotation Gene Ontology Database Homepage

ChainsPolymerMolecular FunctionBiological ProcessCellular Component
A, B, C, D
oxidoreductase - -

InterPro: Protein Family Classification InterPro Database Homepage

ChainsAccessionNameType
A, B, C, D
IPR036291NAD(P)-binding domain superfamilyHomologous Superfamily
A, B, C, D
IPR002347Short-chain dehydrogenase/reductase SDRFamily
A, B, C, D
IPR020904Short-chain dehydrogenase/reductase, conserved siteConserved Site